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BMAL1 basic helix-loop-helix ARNT like 1 [ Bos mutus (wild yak) ]

Gene ID: 102265082, updated on 10-Mar-2024

Summary

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Gene symbol
BMAL1
Gene description
basic helix-loop-helix ARNT like 1
Locus tag
M91_01346
See related
Ensembl:ENSBMUG00000009463
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos mutus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ARNTL
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current BosGru_v2.0 (GCF_000298355.1) Unplaced Scaffold NW_005392880.1 (139319..172639, complement)

NW_005392880.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 10 Neighboring gene parathyroid hormone Neighboring gene Ras association domain family member 10 Neighboring gene TEA domain transcription factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005392880.1 Unplaced Scaffold Reference BosGru_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 1
Names
aryl hydrocarbon receptor nuclear translocator like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos mutus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BosGru_v2.0 Primary Assembly

Genomic

  1. NW_005392880.1 Reference BosGru_v2.0 Primary Assembly

    Range
    139319..172639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005887176.1 → XP_005887238.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

    See identical proteins and their annotated locations for XP_005887238.1

    UniProtKB/TrEMBL
    L8J172
    Conserved Domains (3) summary
    smart00091
    Location:149 → 208
    PAS; PAS domain
    pfam00010
    Location:74 → 126
    HLH; Helix-loop-helix DNA-binding domain
    cl25986
    Location:338 → 440
    PAS_3; PAS fold

  2. XM_014477275.1 → XP_014332761.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    UniProtKB/TrEMBL
    L8J172
    Related
    ENSBMUP00000012390.1, ENSBMUT00000014361.1
    Conserved Domains (3) summary
    smart00091
    Location:149 → 208
    PAS; PAS domain
    pfam00010
    Location:74 → 126
    HLH; Helix-loop-helix DNA-binding domain
    cl25986
    Location:339 → 441
    PAS_3; PAS fold

  3. XM_005887175.1 → XP_005887237.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

    UniProtKB/TrEMBL
    L8J172
    Conserved Domains (5) summary
    smart00091
    Location:156 → 215
    PAS; PAS domain
    cd00130
    Location:347 → 442
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:81 → 133
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:153 → 260
    PAS; PAS fold
    pfam14598
    Location:345 → 447
    PAS_11; PAS domain

  4. XM_014477271.1 → XP_014332757.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    UniProtKB/TrEMBL
    L8J172
    Conserved Domains (5) summary
    smart00091
    Location:156 → 215
    PAS; PAS domain
    cd00130
    Location:348 → 443
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:81 → 133
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:153 → 260
    PAS; PAS fold
    pfam14598
    Location:346 → 448
    PAS_11; PAS domain
Nucleotide Protein
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