U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ANKRD6 ankyrin repeat domain 6 [ Sus scrofa (pig) ]

Gene ID: 102167335, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ANKRD6provided by VGNC
Official Full Name
ankyrin repeat domain 6provided by VGNC
Primary source
VGNC:VGNC:103025
See related
Ensembl:ENSSSCG00000004322
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 6.3), heart (RPKM 2.7) and 3 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (57437947..57648262)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (64482282..64551241)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 J1 Neighboring gene Ras related GTP binding D Neighboring gene 40S ribosomal protein S18-like Neighboring gene LYR motif containing 2 Neighboring gene midasin AAA ATPase 1 Neighboring gene transcription factor BTF3 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat domain-containing protein 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    57437947..57648262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021089984.1 → XP_020945643.1  ankyrin repeat domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A287B3P4, A0A480L9N5, A0A4X1VIB8, A0A8D1C106, A0A8D1IQ94
    Related
    ENSSSCP00000051099.2, ENSSSCT00000056510.2
    Conserved Domains (4) summary
    cd00204
    Location:130 → 255
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:169 → 199
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:104 → 134
    Ank; Ankyrin repeat
    pfam13637
    Location:235 → 287
    Ank_4; Ankyrin repeats (many copies)

  2. XM_021089998.1 → XP_020945657.1  ankyrin repeat domain-containing protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A287B3P4, A0A8D1C106, A0A8D1IQ94
    Conserved Domains (4) summary
    cd00204
    Location:130 → 255
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:169 → 199
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:104 → 134
    Ank; Ankyrin repeat
    cl26072
    Location:218 → 322
    Ank_5; Ankyrin repeats (many copies)

  3. XM_021089991.1 → XP_020945650.1  ankyrin repeat domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A480JX65, A0A4X1VI83, A0A8D0T4G1, A0A8D0U822, A0A8D1C157, A0A8D1D4R3
    Related
    ENSSSCP00000043818.1, ENSSSCT00000043370.3
    Conserved Domains (3) summary
    cd00204
    Location:102 → 227
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:141 → 171
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:207 → 259
    Ank_4; Ankyrin repeats (many copies)

  4. XM_021090003.1 → XP_020945662.1  ankyrin repeat domain-containing protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A481D0D4, A0A4X1VJF4, A0A8D0T4E6, A0A8D0VTB5, A0A8D1BCF9
    Related
    ENSSSCP00000037893.1, ENSSSCT00000063190.1
    Conserved Domains (3) summary
    cd00204
    Location:102 → 227
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:141 → 171
    ANK; ANK repeat [structural motif]
    cl26072
    Location:190 → 294
    Ank_5; Ankyrin repeats (many copies)

  5. XM_021089994.1 → XP_020945653.1  ankyrin repeat domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A480JX65, A0A4X1VI83, A0A8D0T4G1, A0A8D0U822, A0A8D1C157, A0A8D1D4R3
    Conserved Domains (3) summary
    cd00204
    Location:102 → 227
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:141 → 171
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:207 → 259
    Ank_4; Ankyrin repeats (many copies)

  6. XM_021089992.1 → XP_020945651.1  ankyrin repeat domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A480JX65, A0A4X1VI83, A0A8D0T4G1, A0A8D0U822, A0A8D1C157, A0A8D1D4R3
    Conserved Domains (3) summary
    cd00204
    Location:102 → 227
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:141 → 171
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:207 → 259
    Ank_4; Ankyrin repeats (many copies)

  7. XM_021089988.1 → XP_020945647.1  ankyrin repeat domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A287B3P4, A0A480L9N5, A0A4X1VIB8, A0A8D1C106, A0A8D1IQ94
    Conserved Domains (4) summary
    cd00204
    Location:130 → 255
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:169 → 199
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:104 → 134
    Ank; Ankyrin repeat
    pfam13637
    Location:235 → 287
    Ank_4; Ankyrin repeats (many copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.