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ABLIM2 actin binding LIM protein family member 2 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102064184, updated on 3-Aug-2024

Summary

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Gene symbol
ABLIM2
Gene description
actin binding LIM protein family member 2
See related
Ensembl:ENSZALG00000007543
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See ABLIM2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081566.1 (3273367..3373914)

NW_005081566.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113459113 Neighboring gene HtrA serine peptidase 3 Neighboring gene SH3 domain and tetratricopeptide repeats 1 Neighboring gene actin filament associated protein 1 Neighboring gene sortilin related VPS10 domain containing receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081566 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081566.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    3273367..3373914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005485726.3 → XP_005485783.1  actin-binding LIM protein 2 isoform X2

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:638 → 672
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 636
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_014266093.1 → XP_014121568.1  actin-binding LIM protein 2 isoform X1

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:639 → 673
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 637
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  3. XM_005485727.3 → XP_005485784.1  actin-binding LIM protein 2 isoform X4

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:620 → 654
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 618
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  4. XM_005485728.3 → XP_005485785.1  actin-binding LIM protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:606 → 640
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 604
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  5. XM_014266098.2 → XP_014121573.1  actin-binding LIM protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:554 → 588
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 552
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  6. XM_014266094.2 → XP_014121569.1  actin-binding LIM protein 2 isoform X3

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:628 → 662
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 626
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  7. XM_014266100.2 → XP_014121575.1  actin-binding LIM protein 2 isoform X10

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:609 → 643
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 607
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  8. XM_005485729.3 → XP_005485786.1  actin-binding LIM protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:595 → 629
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 593
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  9. XM_005485730.3 → XP_005485787.1  actin-binding LIM protein 2 isoform X11

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:576 → 610
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 574
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  10. XM_014266099.2 → XP_014121574.1  actin-binding LIM protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Related
    ENSZALP00000008694.1, ENSZALT00000012243.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:543 → 577
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 541
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  11. XM_014266101.2 → XP_014121576.1  actin-binding LIM protein 2 isoform X12

    UniProtKB/TrEMBL
    A0A8D2QDW2
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:524 → 558
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 522
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  12. XM_026792609.1 → XP_026648410.1  actin-binding LIM protein 2 isoform X9

Nucleotide Protein
Heading Accession and Version

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