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PUM2 pumilio RNA binding family member 2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102044451, updated on 10-Mar-2024

Summary

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Gene symbol
PUM2
Gene description
pumilio RNA binding family member 2
See related
Ensembl:ENSGFOG00000010379
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054318.1 (1394699..1463951)

NW_005054318.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1-like Neighboring gene ras homolog family member B Neighboring gene syndecan 1 Neighboring gene protein LYRIC-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054318 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pumilio homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054318.1 Reference GeoFor_1.0

    Range
    1394699..1463951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014306747.2 → XP_014162222.1  pumilio homolog 2 isoform X5

    UniProtKB/TrEMBL
    A0A6I9Z6K6
    Conserved Domains (1) summary
    cd07920
    Location:711 → 1034
    Pumilio; Pumilio-family RNA binding domain

  2. XM_014306748.2 → XP_014162223.1  pumilio homolog 2 isoform X6

    UniProtKB/TrEMBL
    A0A6I9Z5D2
    Conserved Domains (1) summary
    cd07920
    Location:711 → 1032
    Pumilio; Pumilio-family RNA binding domain

  3. XM_014306743.2 → XP_014162218.1  pumilio homolog 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I9Z852
    Conserved Domains (1) summary
    cd07920
    Location:717 → 1040
    Pumilio; Pumilio-family RNA binding domain

  4. XM_014306744.2 → XP_014162219.1  pumilio homolog 2 isoform X4

    UniProtKB/TrEMBL
    A0A6I9Z983
    Related
    ENSGFOP00000015197.1, ENSGFOT00000015701.1
    Conserved Domains (1) summary
    cd07920
    Location:717 → 1038
    Pumilio; Pumilio-family RNA binding domain

  5. XM_031056444.1 → XP_030912304.1  pumilio homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A8N5EHU6
    Conserved Domains (1) summary
    cd07920
    Location:638 → 961
    Pumilio; Pumilio-family RNA binding domain

  6. XM_014306745.2 → XP_014162220.1  pumilio homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I9Z941
    Related
    ENSGFOP00000015211.1, ENSGFOT00000015716.1
    Conserved Domains (1) summary
    cd07920
    Location:638 → 959
    Pumilio; Pumilio-family RNA binding domain

  7. XM_031056445.1 → XP_030912305.1  pumilio homolog 2 isoform X7

    UniProtKB/TrEMBL
    A0A8N5HXH5
    Conserved Domains (1) summary
    cd07920
    Location:491 → 814
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein
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