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DHX58 DExH-box helicase 58 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102044160, updated on 3-Aug-2024

Summary

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Gene symbol
DHX58
Gene description
DExH-box helicase 58
See related
Ensembl:ENSGFOG00000005479
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054559.1 (720231..724557)

NW_005054559.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 30C-like Neighboring gene lysine acetyltransferase 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054559 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054559.1 Reference GeoFor_1.0

    Range
    720231..724557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005429629.2 → XP_005429686.1  LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58

    UniProtKB/TrEMBL
    A0A6I9HU96
    Related
    ENSGFOT00000008055.1
    Conserved Domains (4) summary
    cd12090
    Location:187 → 301
    MDA5_ID; Insert domain of MDA5
    cd18802
    Location:304 → 441
    SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
    cl13152
    Location:510 → 622
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl28899
    Location:5 → 159
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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