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TSPAN18 tetraspanin 18 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102039752, updated on 3-Aug-2024

Summary

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Gene symbol
TSPAN18
Gene description
tetraspanin 18
See related
Ensembl:ENSGFOG00000006246
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054312.1 (4184300..4304382, complement)

NW_005054312.1Genomic Context describing neighboring genes Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene PR/SET domain 11 Neighboring gene tumor protein p53 inducible protein 11 Neighboring gene CD82 molecule Neighboring gene ALX homeobox 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054312 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054312.1 Reference GeoFor_1.0

    Range
    4184300..4304382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031055749.1 → XP_030911609.1  tetraspanin-18 isoform X2

    UniProtKB/TrEMBL
    A0A8N5EGF8
    Conserved Domains (1) summary
    cd03156
    Location:87 → 192
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  2. XM_031055745.1 → XP_030911605.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HG58
    Conserved Domains (2) summary
    cd03156
    Location:105 → 217
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 242
    Tetraspannin; Tetraspanin family

  3. XM_031055746.1 → XP_030911606.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HG58
    Conserved Domains (2) summary
    cd03156
    Location:105 → 217
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 242
    Tetraspannin; Tetraspanin family

  4. XM_031055747.1 → XP_030911607.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HG58
    Conserved Domains (2) summary
    cd03156
    Location:105 → 217
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 242
    Tetraspannin; Tetraspanin family

  5. XM_005419477.2 → XP_005419534.1  tetraspanin-18 isoform X1

    See identical proteins and their annotated locations for XP_005419534.1

    UniProtKB/TrEMBL
    A0A6I9HG58
    Related
    ENSGFOP00000008922.1, ENSGFOT00000009215.1
    Conserved Domains (2) summary
    cd03156
    Location:105 → 217
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 242
    Tetraspannin; Tetraspanin family

  6. XM_031055748.1 → XP_030911608.1  tetraspanin-18 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HG58
    Conserved Domains (2) summary
    cd03156
    Location:105 → 217
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:10 → 242
    Tetraspannin; Tetraspanin family
Nucleotide Protein
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