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HDLBP high density lipoprotein binding protein [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102037221, updated on 3-Aug-2024

Summary

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Gene symbol
HDLBP
Gene description
high density lipoprotein binding protein
See related
Ensembl:ENSGFOG00000000071
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054380.1 (2358995..2382469)

NW_005054380.1Genomic Context describing neighboring genes Neighboring gene FERM, ARH/RhoGEF and pleckstrin domain protein 2 Neighboring gene septin 2 Neighboring gene protein phosphatase 1 regulatory subunit 7 Neighboring gene PAS domain containing serine/threonine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054380 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: vigilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054380.1 Reference GeoFor_1.0

    Range
    2358995..2382469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005425064.2 → XP_005425121.1  LOW QUALITY PROTEIN: vigilin

    UniProtKB/TrEMBL
    A0A6I9HMG4
    Related
    ENSGFOP00000000076.1, ENSGFOT00000000080.1
    Conserved Domains (1) summary
    cd02394
    Location:654 → 716
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
Nucleotide Protein
Heading Accession and Version

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