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HDLBP high density lipoprotein binding protein [ Homo sapiens (human) ]

Gene ID: 3069, updated on 7-Aug-2022

Summary

Official Symbol
HDLBPprovided by HGNC
Official Full Name
high density lipoprotein binding proteinprovided by HGNC
Primary source
HGNC:HGNC:4857
See related
Ensembl:ENSG00000115677 MIM:142695; AllianceGenome:HGNC:4857
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HBP; VGL; PRO2900
Summary
The protein encoded by this gene binds high density lipoprotein (HDL) and may function to regulate excess cholesterol levels in cells. The encoded protein also binds RNA and can induce heterochromatin formation. [provided by RefSeq, Mar 2016]
Expression
Ubiquitous expression in testis (RPKM 89.6), thyroid (RPKM 63.1) and 25 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

See HDLBP in Genome Data Viewer
Location:
2q37.3
Exon count:
35
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (241227291..241315672, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (241726284..241814658, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242166706..242255087, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene PAS domain containing serine/threonine kinase Neighboring gene uncharacterized LOC105373971 Neighboring gene protein phosphatase 1 regulatory subunit 7 Neighboring gene uncharacterized LOC105376810 Neighboring gene anoctamin 7 Neighboring gene HDLBP antisense RNA 1 Neighboring gene septin 2 Neighboring gene uncharacterized LOC105373973 Neighboring gene Sharpr-MPRA regulatory region 5168 Neighboring gene FERM, ARH/RhoGEF and pleckstrin domain protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Pr55(Gag) gag Cellular biotinylated high density lipoprotein binding protein (HDLBP, Vigilin) is incorporated into HIV-1 Gag virus-like particles PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ16432

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables cadherin binding HDA PubMed 
enables lipid binding TAS
Traceable Author Statement
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
part_of polysome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
vigilin
Names
HDL-binding protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243900.3NP_001230829.1  vigilin isoform b

    See identical proteins and their annotated locations for NP_001230829.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses a downstream promoter compared to variant 1.
    Source sequence(s)
    AC104841, AI434711, AK300312, BP359370
    Consensus CDS
    CCDS58760.1
    UniProtKB/Swiss-Prot
    Q00341
    Related
    ENSP00000399139.2, ENST00000427183.6
    Conserved Domains (1) summary
    cd02394
    Location:622684
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  2. NM_001320965.3NP_001307894.1  vigilin isoform a

    Status: REVIEWED

    Source sequence(s)
    AC104841, AI434711, AK312335, DC400438
    Consensus CDS
    CCDS2547.1
    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5, B2R5V9
    Related
    ENSP00000375837.2, ENST00000391976.6
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  3. NM_001320966.3NP_001307895.1  vigilin isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) uses a downstream promoter compared to variant 1.
    Source sequence(s)
    AC104841, AI434711, AK312335, BP283713
    Consensus CDS
    CCDS2547.1
    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5, B2R5V9
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  4. NM_001320967.3NP_001307896.1  vigilin isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) uses a downstream promoter compared to variant 1.
    Source sequence(s)
    AC104841, AI434711, AK312335, BP359370, DB282620
    UniProtKB/TrEMBL
    B2R5V9
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  5. NM_005336.6NP_005327.1  vigilin isoform a

    See identical proteins and their annotated locations for NP_005327.1

    Status: REVIEWED

    Source sequence(s)
    AC104841, KF456779
    Consensus CDS
    CCDS2547.1
    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5, B2R5V9
    Related
    ENSP00000312042.4, ENST00000310931.10
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  6. NM_203346.6NP_976221.1  vigilin isoform a

    See identical proteins and their annotated locations for NP_976221.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses a downstream promoter compared to variant 1.
    Source sequence(s)
    AC104841, AI434711, AK312335, BP359370, DB282620
    Consensus CDS
    CCDS2547.1
    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5, B2R5V9
    Related
    ENSP00000375836.1, ENST00000391975.5
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    241227291..241315672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017003941.3XP_016859430.1  vigilin isoform X2

    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  2. XM_011511060.4XP_011509362.1  vigilin isoform X1

    See identical proteins and their annotated locations for XP_011509362.1

    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  3. XM_011511058.4XP_011509360.1  vigilin isoform X1

    See identical proteins and their annotated locations for XP_011509360.1

    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  4. XM_024452833.2XP_024308601.1  vigilin isoform X1

    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  5. XM_047444077.1XP_047300033.1  vigilin isoform X2

  6. XM_047444067.1XP_047300023.1  vigilin isoform X1

  7. XM_047444073.1XP_047300029.1  vigilin isoform X1

  8. XM_047444079.1XP_047300035.1  vigilin isoform X2

  9. XM_047444068.1XP_047300024.1  vigilin isoform X1

  10. XM_047444071.1XP_047300027.1  vigilin isoform X1

  11. XM_047444070.1XP_047300026.1  vigilin isoform X1

  12. XM_017003942.2XP_016859431.1  vigilin isoform X2

    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  13. XM_005247002.5XP_005247059.2  vigilin isoform X1

    See identical proteins and their annotated locations for XP_005247059.2

    UniProtKB/Swiss-Prot
    Q00341
    UniProtKB/TrEMBL
    A0A024R4E5
    Conserved Domains (15) summary
    cd02394
    Location:435502
    KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22405
    Location:77144
    KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22406
    Location:147221
    KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22407
    Location:224283
    KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22408
    Location:297358
    KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22409
    Location:364433
    KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22410
    Location:507573
    KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22411
    Location:583644
    KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22412
    Location:653722
    KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22413
    Location:726791
    KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22414
    Location:802867
    KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22415
    Location:875970
    KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22416
    Location:9721049
    KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22417
    Location:10531126
    KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    cd22418
    Location:11281196
    KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
  14. XM_047444078.1XP_047300034.1  vigilin isoform X2

  15. XM_047444075.1XP_047300031.1  vigilin isoform X1

  16. XM_047444069.1XP_047300025.1  vigilin isoform X1

  17. XM_047444076.1XP_047300032.1  vigilin isoform X1

  18. XM_047444072.1XP_047300028.1  vigilin isoform X1

  19. XM_047444074.1XP_047300030.1  vigilin isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    241726284..241814658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)