U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pdlim5 PDZ and LIM domain 5 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102011944, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Pdlim5
Gene description
PDZ and LIM domain 5
See related
Ensembl:ENSCLAG00000006359
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955405.1 (5109778..5312192)

NW_004955405.1Genomic Context describing neighboring genes Neighboring gene DNA endonuclease RBBP8 pseudogene Neighboring gene DNA endonuclease RBBP8 pseudogene Neighboring gene bone morphogenetic protein receptor type 1B Neighboring gene unc-5 netrin receptor C Neighboring gene uncharacterized LOC106149217

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004955405.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PDZ and LIM domain protein 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955405.1 Reference ChiLan1.0 Primary Assembly

    Range
    5109778..5312192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013517363.1 → XP_013372817.1  PDZ and LIM domain protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C2V1Z7
    Conserved Domains (5) summary
    cd09453
    Location:426 → 477
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:485 → 536
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:214 → 300
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:544 → 598
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_005374260.2 → XP_005374317.1  PDZ and LIM domain protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C2V1Z7, A0A8C2V335
    Related
    ENSCLAP00000009112.1, ENSCLAT00000009241.1
    Conserved Domains (5) summary
    cd09453
    Location:420 → 471
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:479 → 530
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:214 → 294
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:538 → 592
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_005374259.2 → XP_005374316.1  PDZ and LIM domain protein 5 isoform X9

    UniProtKB/TrEMBL
    A0A8C2V717
    Related
    ENSCLAP00000009116.1, ENSCLAT00000009245.1
    Conserved Domains (5) summary
    cd09453
    Location:445 → 496
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:504 → 555
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:105 → 191
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:563 → 617
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_005374261.2 → XP_005374318.1  PDZ and LIM domain protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2V1Z7
    Conserved Domains (4) summary
    cd09453
    Location:317 → 368
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:105 → 191
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:435 → 489
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_005374262.2 → XP_005374319.1  PDZ and LIM domain protein 5 isoform X4

    UniProtKB/TrEMBL
    A0A8C2V1Z7
    Related
    ENSCLAP00000009118.1, ENSCLAT00000009247.1
    Conserved Domains (4) summary
    cd09453
    Location:311 → 362
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:105 → 185
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:429 → 483
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  6. XM_005374263.2 → XP_005374320.2  PDZ and LIM domain protein 5 isoform X5

    UniProtKB/TrEMBL
    A0A8C2V1Z7
    Conserved Domains (4) summary
    cd09453
    Location:297 → 348
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:100 → 171
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:415 → 469
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  7. XM_005374265.1 → XP_005374322.1  PDZ and LIM domain protein 5 isoform X6

    UniProtKB/TrEMBL
    A0A8C2V5I3
    Related
    ENSCLAP00000009113.1, ENSCLAT00000009242.1
    Conserved Domains (2) summary
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:214 → 294
    DUF4749; Domain of unknown function (DUF4749)

  8. XM_005374266.1 → XP_005374323.1  PDZ and LIM domain protein 5 isoform X7

    UniProtKB/TrEMBL
    A0A8C2V2F8, A0A8C2V820
    Related
    ENSCLAP00000009114.1, ENSCLAT00000009243.1
    Conserved Domains (2) summary
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:105 → 191
    DUF4749; Domain of unknown function (DUF4749)

  9. XM_013517385.1 → XP_013372839.1  PDZ and LIM domain protein 5 isoform X8

    UniProtKB/TrEMBL
    A0A8C2V2F8, A0A8C2V490
    Related
    ENSCLAP00000009115.1, ENSCLAT00000009244.1
    Conserved Domains (2) summary
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:100 → 171
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.