U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gata3 GATA binding protein 3 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 102002576, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Gata3
Gene description
GATA binding protein 3
See related
Ensembl:ENSMOCG00000013212
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 16 NC_022018.1 (26974822..26993907, complement)

Chromosome 16 - NC_022018.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113456798 Neighboring gene U6 spliceosomal RNA Neighboring gene ubiquitin-like protein 5 Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene ATP synthase F1 subunit gamma

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_022018.1 Chromosome 16 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
trans-acting T-cell-specific transcription factor GATA-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022018.1 Reference MicOch1.0

    Range
    26974822..26993907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026783138.1 → XP_026638939.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

    UniProtKB/TrEMBL
    A0A8J6GL47
    Conserved Domains (2) summary
    PHA03377
    Location:77 → 244
    PHA03377; EBNA-3C; Provisional
    cd00202
    Location:316 → 366
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_026783137.1 → XP_026638938.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

    UniProtKB/TrEMBL
    A0A8J6GL47
    Related
    ENSMOCP00000013404.1, ENSMOCT00000017152.1
    Conserved Domains (2) summary
    PHA03377
    Location:77 → 261
    PHA03377; EBNA-3C; Provisional
    cd00202
    Location:317 → 367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_026783140.1 → XP_026638941.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X4

    Conserved Domains (3) summary
    PHA03377
    Location:77 → 244
    PHA03377; EBNA-3C; Provisional
    smart00401
    Location:312 → 350
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:262 → 312
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_026783139.1 → XP_026638940.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X3

    Conserved Domains (3) summary
    PHA03377
    Location:77 → 261
    PHA03377; EBNA-3C; Provisional
    smart00401
    Location:313 → 351
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:263 → 313
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.