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Ddx43 DEAD-box helicase 43 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977897, updated on 8-Mar-2024

Summary

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Gene symbol
Ddx43
Gene description
DEAD-box helicase 43
Locus tag
H1C71_026075
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Ddx43 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404946.1 (70763368..70793241)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936859.1 (817298..842113, complement)

NW_024404946.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene developmental pluripotency associated 5 Neighboring gene oocyte expressed protein Neighboring gene cyclic GMP-AMP synthase Neighboring gene mitochondrial tRNA translation optimization 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404946.1 Reference HiC_Itri_2 Primary Assembly

    Range
    70763368..70793241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040282032.1 → XP_040137966.1  probable ATP-dependent RNA helicase DDX43

    Conserved Domains (2) summary
    smart00322
    Location:139 → 187
    KH; K homology RNA-binding domain
    PTZ00110
    Location:209 → 633
    PTZ00110; helicase; Provisional
Nucleotide Protein
Heading Accession and Version

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