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Hnrnpm heterogeneous nuclear ribonucleoprotein M [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977112, updated on 8-Mar-2024

Summary

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Gene symbol
Hnrnpm
Gene description
heterogeneous nuclear ribonucleoprotein M
Locus tag
H1C71_007485
See related
EnsemblRapid:ENSSTOG00015022083 EnsemblRapid:ENSSTOG00015022798
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (212550835..212612298, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936588.1 (5241276..5283952)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene myosin IF Neighboring gene zinc finger protein 414 Neighboring gene PML-RARA regulated adaptor molecule 1 Neighboring gene RAB11B, member RAS oncogene family Neighboring gene angiopoietin like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability involved in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    212550835..212612298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040290519.1 → XP_040146453.1  heterogeneous nuclear ribonucleoprotein M isoform X5

    Conserved Domains (4) summary
    TIGR01628
    Location:265 → 447
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:821 → 890
    RRM; RNA recognition motif
    pfam09606
    Location:551 → 769
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  2. XM_040290518.1 → XP_040146452.1  heterogeneous nuclear ribonucleoprotein M isoform X4

    Conserved Domains (4) summary
    smart00360
    Location:827 → 896
    RRM; RNA recognition motif
    COG0724
    Location:237 → 479
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    TIGR01659
    Location:409 → 559
    sex-lethal; sex-lethal family splicing factor
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  3. XM_040290517.1 → XP_040146451.1  heterogeneous nuclear ribonucleoprotein M isoform X3

    Conserved Domains (3) summary
    smart00360
    Location:842 → 911
    RRM; RNA recognition motif
    COG0724
    Location:237 → 479
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  4. XM_040290515.1 → XP_040146449.1  heterogeneous nuclear ribonucleoprotein M isoform X1

    Conserved Domains (4) summary
    smart00360
    Location:860 → 929
    RRM; RNA recognition motif
    COG0724
    Location:237 → 479
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam09606
    Location:590 → 808
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  5. XM_021730970.2 → XP_021586645.2  heterogeneous nuclear ribonucleoprotein M isoform X10

    UniProtKB/TrEMBL
    A0A287DGF2
    Conserved Domains (3) summary
    TIGR01628
    Location:73 → 294
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    smart00360
    Location:668 → 737
    RRM; RNA recognition motif
    pfam09606
    Location:398 → 616
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  6. XM_005332155.3 → XP_005332212.1  heterogeneous nuclear ribonucleoprotein M isoform X9

    UniProtKB/TrEMBL
    A0A287DGF2, I3MB28
    Related
    ENSSTOP00015028232.1, ENSSTOT00015030667.1
    Conserved Domains (5) summary
    pfam11532
    Location:41 → 70
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:72 → 147
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:165 → 240
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:615 → 691
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:375 → 514
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  7. XM_005332153.3 → XP_005332210.1  heterogeneous nuclear ribonucleoprotein M isoform X7

    UniProtKB/TrEMBL
    A0A287D670, A0A287DGF2
    Related
    ENSSTOP00015028231.1, ENSSTOT00015030666.1
    Conserved Domains (5) summary
    pfam11532
    Location:41 → 70
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:72 → 147
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:204 → 279
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:654 → 730
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:414 → 553
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  8. XM_005332156.4 → XP_005332213.1  heterogeneous nuclear ribonucleoprotein M isoform X11

    See identical proteins and their annotated locations for XP_005332213.1

    UniProtKB/TrEMBL
    A0A287DGF2
    Conserved Domains (5) summary
    TIGR01628
    Location:82 → 236
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12659
    Location:84 → 159
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:519 → 595
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:279 → 418
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA
    cl17169
    Location:1 → 27
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_040290516.1 → XP_040146450.1  heterogeneous nuclear ribonucleoprotein M isoform X2

    Conserved Domains (4) summary
    smart00360
    Location:845 → 914
    RRM; RNA recognition motif
    COG0724
    Location:237 → 479
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    TIGR01659
    Location:409 → 559
    sex-lethal; sex-lethal family splicing factor
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  10. XM_013361455.3 → XP_013216909.1  heterogeneous nuclear ribonucleoprotein M isoform X8

    UniProtKB/TrEMBL
    A0A287DGF2
    Conserved Domains (4) summary
    cd12657
    Location:72 → 147
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:204 → 279
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:639 → 715
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    pfam11532
    Location:41 → 70
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M

  11. XM_040290520.1 → XP_040146454.1  heterogeneous nuclear ribonucleoprotein M isoform X6

    Conserved Domains (4) summary
    smart00360
    Location:860 → 884
    RRM; RNA recognition motif
    COG0724
    Location:237 → 479
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam09606
    Location:590 → 808
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)

  12. XM_005332152.4 → XP_005332209.1  heterogeneous nuclear ribonucleoprotein M isoform X12

    UniProtKB/TrEMBL
    I3MB04
    Related
    ENSSTOP00015027301.1, ENSSTOT00015029651.1
    Conserved Domains (1) summary
    cd16808
    Location:62 → 113
    RING_CH-C4HC3_MARCH2; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH2 (MARCH2)
Nucleotide Protein
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