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Tefm transcription elongation factor, mitochondrial [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969776, updated on 8-Mar-2024

Summary

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Gene symbol
Tefm
Gene description
transcription elongation factor, mitochondrial
See related
EnsemblRapid:ENSSTOG00015016625
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (39911984..39934648)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936538.1 (2803195..2812939)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA11 Neighboring gene ras homolog family member T1 Neighboring gene ring finger protein 135 Neighboring gene ArfGAP with dual PH domains 2 Neighboring gene ATPase family AAA domain containing 5 Neighboring gene uncharacterized LOC120884162 Neighboring gene cytokine receptor like factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA polymerase processivity factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by mitochondrial RNA polymerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    39911984..39934648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040269144.1 → XP_040125078.1  transcription elongation factor, mitochondrial

    UniProtKB/TrEMBL
    I3MJ07
    Conserved Domains (2) summary
    cl39090
    Location:67 → 133
    ComEA; DNA uptake protein ComE and related DNA-binding proteins [Replication, recombination and repair]
    cl21482
    Location:161 → 355
    RuvC_like; Crossover junction endodeoxyribonuclease RuvC and similar proteins

  2. XM_005327939.4 → XP_005327996.2  transcription elongation factor, mitochondrial

    UniProtKB/TrEMBL
    I3MJ07
    Related
    ENSSTOP00015020399.1, ENSSTOT00015022335.1
    Conserved Domains (2) summary
    cl39090
    Location:67 → 133
    ComEA; DNA uptake protein ComE and related DNA-binding proteins [Replication, recombination and repair]
    cl21482
    Location:161 → 355
    RuvC_like; Crossover junction endodeoxyribonuclease RuvC and similar proteins
Nucleotide Protein
Heading Accession and Version

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