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TCERG1 transcription elongation regulator 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101866694, updated on 3-Apr-2024

Summary

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Gene symbol
TCERG1
Gene description
transcription elongation regulator 1
See related
Ensembl:ENSMFAG00000044853
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
25
Annotation release Status Assembly Chr Location
102 current MFA1912RKSv2 (GCF_012559485.2) 6 NC_052260.1 (141594743..141658432)
101 previous assembly Macaca_fascicularis_5.0 (GCF_000364345.1) 6 NC_022277.1 (145700192..145764090)

Chromosome 6 - NC_052260.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 27 Neighboring gene POU class 4 homeobox 3 Neighboring gene G protein-coupled receptor 151 Neighboring gene uncharacterized LOC107130088 Neighboring gene protein phosphatase 2 regulatory subunit Bbeta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca fascicularis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MFA1912RKSv2 Primary Assembly

Genomic

  1. NC_052260.1 Reference MFA1912RKSv2 Primary Assembly

    Range
    141594743..141658432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005558142.3 → XP_005558199.1  transcription elongation regulator 1 isoform X1

    See identical proteins and their annotated locations for XP_005558199.1

    UniProtKB/TrEMBL
    A0A2K5VRX7
    Related
    ENSMFAP00000027504.1
    Conserved Domains (5) summary
    smart00456
    Location:132 → 164
    WW; Domain with 2 conserved Trp (W) residues
    COG5104
    Location:419 → 1033
    PRP40; Splicing factor [RNA processing and modification]
    pfam05109
    Location:258 → 363
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam01846
    Location:1030 → 1089
    FF; FF domain
    cl28929
    Location:321 → 411
    VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)

  2. XM_005558143.3 → XP_005558200.1  transcription elongation regulator 1 isoform X2

    See identical proteins and their annotated locations for XP_005558200.1

    UniProtKB/TrEMBL
    G7P8K9
    Related
    ENSMFAP00000027510.1
    Conserved Domains (5) summary
    COG5104
    Location:419 → 1016
    PRP40; Splicing factor [RNA processing and modification]
    pfam05109
    Location:258 → 363
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00397
    Location:137 → 162
    WW; WW domain
    pfam01846
    Location:1013 → 1072
    FF; FF domain
    cl28929
    Location:321 → 411
    VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)

  3. XM_005558144.3 → XP_005558201.1  transcription elongation regulator 1 isoform X3

    See identical proteins and their annotated locations for XP_005558201.1

    UniProtKB/TrEMBL
    A0A2K5VRX7
    Conserved Domains (4) summary
    PHA03247
    Location:291 → 420
    PHA03247; large tegument protein UL36; Provisional
    COG5104
    Location:398 → 1012
    PRP40; Splicing factor [RNA processing and modification]
    pfam00397
    Location:137 → 162
    WW; WW domain
    pfam01846
    Location:1009 → 1068
    FF; FF domain

  4. XM_005558145.3 → XP_005558202.1  transcription elongation regulator 1 isoform X4

    See identical proteins and their annotated locations for XP_005558202.1

    UniProtKB/TrEMBL
    G7P8K9
    Related
    ENSMFAP00000027528.1
    Conserved Domains (4) summary
    PHA03247
    Location:291 → 420
    PHA03247; large tegument protein UL36; Provisional
    COG5104
    Location:398 → 995
    PRP40; Splicing factor [RNA processing and modification]
    pfam00397
    Location:137 → 162
    WW; WW domain
    pfam01846
    Location:992 → 1051
    FF; FF domain

  5. XM_045394364.1 → XP_045250299.1  transcription elongation regulator 1 isoform X6

  6. XM_005558146.3 → XP_005558203.1  transcription elongation regulator 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K5VS34
    Conserved Domains (5) summary
    PRK13729
    Location:321 → 411
    PRK13729; conjugal transfer pilus assembly protein TraB; Provisional
    smart00456
    Location:132 → 164
    WW; Domain with 2 conserved Trp (W) residues
    pfam01846
    Location:913 → 964
    FF; FF domain
    cl00157
    Location:419 → 925
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    cl25496
    Location:258 → 363
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

RNA

  1. XR_278344.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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