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Cwc25 CWC25 spliceosome associated protein homolog [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101843770, updated on 8-Mar-2024

Summary

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Gene symbol
Cwc25
Gene description
CWC25 spliceosome associated protein homolog
See related
EnsemblRapid:ENSMAUG00000009241
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Cwc25 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (75552761..75574030, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801661.1 (10126296..10147564, complement)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 3 Neighboring gene phosphatidylinositol-5-phosphate 4-kinase type 2 beta Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog
Names
pre-mRNA-splicing factor CWC25 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    75552761..75574030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040749615.1 → XP_040605549.1  LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog

    UniProtKB/TrEMBL
    A0A3Q0CZE1
    Related
    ENSMAUP00000007612.2, ENSMAUT00000011423.2
    Conserved Domains (2) summary
    pfam10197
    Location:11 → 37
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
    pfam12542
    Location:67 → 157
    CWC25; Pre-mRNA splicing factor
Nucleotide Protein Strain
Heading Accession and Version

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