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Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101840390, updated on 8-Mar-2024

Summary

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Gene symbol
Galnt12
Gene description
polypeptide N-acetylgalactosaminyltransferase 12
See related
EnsemblRapid:ENSMAUG00000011660
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429184.1 (12419853..12450287, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801690.1 (3046484..3079466, complement)

NW_024429184.1Genomic Context describing neighboring genes Neighboring gene collagen type XV alpha 1 chain Neighboring gene uncharacterized LOC121136974 Neighboring gene splicing factor 3B subunit 5-like Neighboring gene uncharacterized LOC121136977 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 6 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 12
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429184.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    12419853..12450287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005078731.4 → XP_005078788.1  polypeptide N-acetylgalactosaminyltransferase 12

    UniProtKB/TrEMBL
    A0A1U7R3P0
    Related
    ENSMAUP00000048758.1, ENSMAUT00000067857.1
    Conserved Domains (4) summary
    cd02510
    Location:140 → 434
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:135 → 430
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:448 → 577
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:446 → 575
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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