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TNFAIP3 TNF alpha induced protein 3 [ Anas platyrhynchos (mallard) ]

Gene ID: 101796300, updated on 8-Mar-2024

Summary

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Gene symbol
TNFAIP3
Gene description
TNF alpha induced protein 3
Locus tag
Anapl_06950
See related
EnsemblRapid:ENSAPLG00030021916
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (58442131..58457398, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (57483922..57499180, complement)

Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119716571 Neighboring gene uncharacterized LOC119716486 Neighboring gene uncharacterized LOC113843219 Neighboring gene oligodendrocyte transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor alpha-induced protein 3
Names
Tumor necrosis factor, alpha-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051774.1 Reference ZJU1.0 Primary Assembly

    Range
    58442131..58457398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021271094.3 → XP_021126769.1  tumor necrosis factor alpha-induced protein 3

    UniProtKB/TrEMBL
    R0LAC5
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease

  2. XM_013097743.4 → XP_012953197.1  tumor necrosis factor alpha-induced protein 3

    See identical proteins and their annotated locations for XP_012953197.1

    UniProtKB/TrEMBL
    R0LAC5
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease

  3. XM_021271095.2 → XP_021126770.1  tumor necrosis factor alpha-induced protein 3

    UniProtKB/TrEMBL
    R0LAC5
    Related
    ENSAPLP00030036754.1, ENSAPLT00030057113.1
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease

  4. XM_027454458.2 → XP_027310259.1  tumor necrosis factor alpha-induced protein 3

    UniProtKB/TrEMBL
    R0LAC5
    Related
    ENSAPLP00030036817.1, ENSAPLT00030057208.1
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease

  5. XM_005017736.5 → XP_005017793.1  tumor necrosis factor alpha-induced protein 3

    See identical proteins and their annotated locations for XP_005017793.1

    UniProtKB/TrEMBL
    R0LAC5
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease

  6. XM_038177260.1 → XP_038033188.1  tumor necrosis factor alpha-induced protein 3

    UniProtKB/TrEMBL
    R0LAC5
    Conserved Domains (2) summary
    smart00259
    Location:776 → 801
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:99 → 258
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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