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RIMBP2 RIMS binding protein 2 [ Anas platyrhynchos (mallard) ]

Gene ID: 101793945, updated on 8-Mar-2024

Summary

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Gene symbol
RIMBP2
Gene description
RIMS binding protein 2
Locus tag
Anapl_02371
See related
EnsemblRapid:ENSAPLG00030013305
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See RIMBP2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
33
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 16 NC_051787.1 (13785626..13944348)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 16 NC_040061.1 (1611410..1769535, complement)

Chromosome 16 - NC_051787.1Genomic Context describing neighboring genes Neighboring gene RAN, member RAS oncogene family Neighboring gene syntaxin 2 Neighboring gene piwi like RNA-mediated gene silencing 1 Neighboring gene uncharacterized LOC110352435

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RIMS-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051787.1 Reference ZJU1.0 Primary Assembly

    Range
    13785626..13944348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021271355.3 → XP_021127030.1  RIMS-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1498 → 1559
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1624 → 1684
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:122 → 403
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_038187705.1 → XP_038043633.1  RIMS-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1498 → 1559
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1602 → 1662
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:122 → 403
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_038187707.1 → XP_038043635.1  RIMS-binding protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1447 → 1508
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1573 → 1633
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:122 → 403
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  4. XM_021271359.3 → XP_021127034.1  RIMS-binding protein 2 isoform X10

    UniProtKB/TrEMBL
    A0A493U1V7
    Related
    ENSAPLP00030023774.1, ENSAPLT00030035068.1
    Conserved Domains (7) summary
    cd12012
    Location:1254 → 1315
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1380 → 1440
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:122 → 403
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_038187710.1 → XP_038043638.1  RIMS-binding protein 2 isoform X11

    UniProtKB/TrEMBL
    A0A493U1V7
    Conserved Domains (7) summary
    cd12012
    Location:1203 → 1264
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1329 → 1389
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:122 → 403
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  6. XM_021271356.3 → XP_021127031.1  RIMS-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1491 → 1552
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1617 → 1677
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:505 → 565
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:820 → 914
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:726 → 789
    fn3; Fibronectin type III domain
    cl21522
    Location:631 → 712
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:122 → 396
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_021271360.3 → XP_021127035.1  RIMS-binding protein 2 isoform X13

    UniProtKB/TrEMBL
    A0A493U1V7
    Related
    ENSAPLP00030023840.1, ENSAPLT00030035177.1
    Conserved Domains (7) summary
    cd12012
    Location:1196 → 1257
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1300 → 1360
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:505 → 565
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:820 → 914
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:726 → 789
    fn3; Fibronectin type III domain
    cl21522
    Location:631 → 712
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:122 → 396
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_021271357.3 → XP_021127032.1  RIMS-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A493SSU1
    Related
    ENSAPLP00030023877.1, ENSAPLT00030035229.1
    Conserved Domains (7) summary
    cd12012
    Location:1474 → 1535
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1600 → 1660
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:488 → 548
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:803 → 897
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:709 → 772
    fn3; Fibronectin type III domain
    cl21522
    Location:614 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:117 → 374
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_038187706.1 → XP_038043634.1  RIMS-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1452 → 1513
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1578 → 1638
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:466 → 526
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    COG1196
    Location:124 → 357
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00063
    Location:781 → 875
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:687 → 750
    fn3; Fibronectin type III domain
    cl21522
    Location:592 → 673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  10. XM_038187708.1 → XP_038043636.1  RIMS-binding protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (7) summary
    cd12012
    Location:1498 → 1559
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1624 → 1684
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:122 → 403
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain
    cl21522
    Location:638 → 719
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  11. XM_021271358.3 → XP_021127033.1  RIMS-binding protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A493TW17
    Conserved Domains (6) summary
    cd12012
    Location:1440 → 1501
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1544 → 1604
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:505 → 565
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:820 → 914
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:726 → 789
    fn3; Fibronectin type III domain
    cl25732
    Location:122 → 396
    SMC_N; RecF/RecN/SMC N terminal domain

  12. XM_021271361.3 → XP_021127036.1  RIMS-binding protein 2 isoform X14

    UniProtKB/TrEMBL
    A0A493U1V7
    Conserved Domains (7) summary
    cd12012
    Location:1196 → 1257
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1300 → 1360
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:505 → 565
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:820 → 914
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:726 → 789
    fn3; Fibronectin type III domain
    cl21522
    Location:631 → 712
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:122 → 396
    SMC_N; RecF/RecN/SMC N terminal domain

  13. XM_021271362.3 → XP_021127037.1  RIMS-binding protein 2 isoform X16

    UniProtKB/TrEMBL
    A0A493U1V7
    Related
    ENSAPLP00030023680.1, ENSAPLT00030034916.1
    Conserved Domains (7) summary
    cd12012
    Location:1179 → 1240
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1283 → 1343
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:488 → 548
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:803 → 897
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:709 → 772
    fn3; Fibronectin type III domain
    cl21522
    Location:614 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl25732
    Location:117 → 374
    SMC_N; RecF/RecN/SMC N terminal domain

  14. XM_038187712.1 → XP_038043640.1  RIMS-binding protein 2 isoform X15

    Conserved Domains (4) summary
    cd12014
    Location:512 → 572
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:827 → 921
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:122 → 403
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:733 → 796
    fn3; Fibronectin type III domain

  15. XM_038187709.1 → XP_038043637.1  RIMS-binding protein 2 isoform X9

    UniProtKB/TrEMBL
    A0A493TPU1
    Related
    ENSAPLP00030023499.1, ENSAPLT00030034626.1
    Conserved Domains (7) summary
    cd12012
    Location:1275 → 1336
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1401 → 1461
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:289 → 349
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    COG1196
    Location:15 → 185
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00063
    Location:604 → 698
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:510 → 573
    fn3; Fibronectin type III domain
    cl21522
    Location:415 → 496
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  16. XM_038187711.1 → XP_038043639.1  RIMS-binding protein 2 isoform X12

    UniProtKB/TrEMBL
    A0A8B9T702
    Related
    ENSAPLP00030023332.1, ENSAPLT00030034378.1
    Conserved Domains (7) summary
    cd12012
    Location:1183 → 1244
    SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12013
    Location:1309 → 1369
    SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd12014
    Location:197 → 257
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    cd00063
    Location:512 → 606
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR02168
    Location:2 → 88
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:418 → 481
    fn3; Fibronectin type III domain
    cl21522
    Location:323 → 404
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
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