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Rbfox3 RNA binding fox-1 homolog 3 [ Jaculus jaculus (lesser Egyptian jerboa) ]

Gene ID: 101606466, updated on 6-Jun-2024

Summary

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Gene symbol
Rbfox3
Gene description
RNA binding fox-1 homolog 3
See related
EnsemblRapid:ENSJJAG00000014167
Gene type
protein coding
RefSeq status
MODEL
Organism
Jaculus jaculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
102 current mJacJac1.mat.Y.cur (GCF_020740685.1) 9 NC_059110.1 (119668222..120145352)
101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504328.1 (19117328..19149086, complement)

Chromosome 9 - NC_059110.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 Neighboring gene endo-beta-N-acetylglucosaminidase Neighboring gene C1q and TNF related 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 3
Names
RNA binding protein, fox-1 homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mJacJac1.mat.Y.cur Primary Assembly

Genomic

  1. NC_059110.1 Reference mJacJac1.mat.Y.cur Primary Assembly

    Range
    119668222..120145352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045159685.1 → XP_045015620.1  RNA binding protein fox-1 homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C5KIC9, A0A8C5KKP4
    Related
    ENSJJAP00000010631.1, ENSJJAT00000017093.2
    Conserved Domains (3) summary
    COG0724
    Location:65 → 232
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam12414
    Location:208 → 344
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:99 → 174
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  2. XM_045159686.1 → XP_045015621.1  RNA binding protein fox-1 homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C5KIC9, A0A8C5KKP4
    Conserved Domains (3) summary
    COG0724
    Location:65 → 232
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam12414
    Location:208 → 344
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:99 → 174
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  3. XM_045159682.1 → XP_045015617.1  RNA binding protein fox-1 homolog 3 isoform X2

  4. XM_004655249.2 → XP_004655306.1  RNA binding protein fox-1 homolog 3 isoform X5

    UniProtKB/TrEMBL
    A0A8C5KKP4
    Conserved Domains (3) summary
    COG0724
    Location:71 → 231
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:98 → 173
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:207 → 296
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  5. XM_004655246.2 → XP_004655303.1  RNA binding protein fox-1 homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C5KIC9, A0A8C5KKP4
    Conserved Domains (3) summary
    COG0724
    Location:65 → 232
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam12414
    Location:208 → 344
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    cd12407
    Location:99 → 174
    RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins

  6. XM_045159684.1 → XP_045015619.1  RNA binding protein fox-1 homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C5KKP4, A0A8C5NZA3
    Related
    ENSJJAP00000010628.1, ENSJJAT00000017090.2

  7. XM_004655248.2 → XP_004655305.1  RNA binding protein fox-1 homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C5KKP4
    Conserved Domains (4) summary
    COG0724
    Location:65 → 232
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:99 → 174
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam05750
    Location:23 → 94
    Rubella_Capsid; Rubella capsid protein
    pfam12414
    Location:208 → 297
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
Nucleotide Protein
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