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TRPC4 transient receptor potential cation channel subfamily C member 4 [ Sorex araneus (European shrew) ]

Gene ID: 101553557, updated on 8-Mar-2024

Summary

Gene symbol
TRPC4
Gene description
transient receptor potential cation channel subfamily C member 4
See related
EnsemblRapid:ENSSARG00000012873
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
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Genomic context

Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 1 NC_073302.1 (218361525..218612164, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545997.1 (3389192..3630860)

Chromosome 1 - NC_073302.1Genomic Context describing neighboring genes Neighboring gene membrane progestin receptor gamma-like Neighboring gene uncharacterized protein C2orf78-like Neighboring gene presenilins-associated rhomboid-like protein, mitochondrial Neighboring gene ubiquitin fold modifier 1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
short transient receptor potential channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073302.1 Reference mSorAra2.pri

    Range
    218361525..218612164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055120153.1XP_054976128.1  short transient receptor potential channel 4 isoform X1

  2. XM_055120161.1XP_054976136.1  short transient receptor potential channel 4 isoform X1

  3. XM_055120178.1XP_054976153.1  short transient receptor potential channel 4 isoform X3

  4. XM_004619557.2XP_004619614.1  short transient receptor potential channel 4 isoform X4

    Related
    ENSSARP00000011623.2, ENSSART00000012870.2
    Conserved Domains (4) summary
    cd00204
    Location:64168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17749
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122167
    ANK; ANK repeat [structural motif]
  5. XM_004619554.2XP_004619611.1  short transient receptor potential channel 4 isoform X1

    Related
    ENSSARP00000035160.1, ENSSART00000030603.1
    Conserved Domains (4) summary
    cd00204
    Location:64168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17754
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122167
    ANK; ANK repeat [structural motif]
  6. XM_004619555.2XP_004619612.1  short transient receptor potential channel 4 isoform X2

    Related
    ENSSARP00000026462.1, ENSSART00000022793.1
    Conserved Domains (4) summary
    cd00204
    Location:64168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17749
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122167
    ANK; ANK repeat [structural motif]