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nav3 neuron navigator 3 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101475246, updated on 8-Mar-2024

Summary

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Gene symbol
nav3
Gene description
neuron navigator 3
See related
Ensembl:ENSMZEG00005014007
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See nav3 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
42
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG17 NC_036796.1 (3557341..3845045)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531975.1 (113417..402544, complement)

Linkage Group LG17 - NC_036796.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-2 Neighboring gene neuroepithelial cell-transforming gene 1 protein Neighboring gene uncharacterized LOC101474294 Neighboring gene zinc finger protein 2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuron navigator 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036796.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    3557341..3845045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012915615.3 → XP_012771069.1  neuron navigator 3 isoform X5

    UniProtKB/TrEMBL
    A0A3P9C9F1
    Conserved Domains (4) summary
    cd00009
    Location:1954 → 2034
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:1951 → 2071
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:20 → 124
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1533 → 1583
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_012915613.3 → XP_012771067.1  neuron navigator 3 isoform X1

    UniProtKB/TrEMBL
    A0A3P9C921, A0A3P9C9F1
    Related
    ENSMZEP00005018780.1, ENSMZET00005019383.1
    Conserved Domains (4) summary
    cd00009
    Location:2017 → 2097
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:2014 → 2134
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1596 → 1646
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  3. XM_012915614.3 → XP_012771068.1  neuron navigator 3 isoform X2

    UniProtKB/TrEMBL
    A0A3P9CA33
    Related
    ENSMZEP00005018756.1, ENSMZET00005019358.1
    Conserved Domains (4) summary
    cd00009
    Location:2009 → 2089
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:2006 → 2126
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1596 → 1646
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  4. XM_004573966.3 → XP_004574023.1  neuron navigator 3 isoform X3

    UniProtKB/TrEMBL
    A0A3P9C9F1
    Conserved Domains (4) summary
    cd00009
    Location:2009 → 2089
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:2006 → 2126
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1588 → 1638
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  5. XM_004573967.3 → XP_004574024.1  neuron navigator 3 isoform X4

    UniProtKB/TrEMBL
    A0A3P9CA33
    Related
    ENSMZEP00005018808.1, ENSMZET00005019412.1
    Conserved Domains (4) summary
    cd00009
    Location:2001 → 2081
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:1998 → 2118
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1588 → 1638
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  6. XM_012915616.3 → XP_012771070.1  neuron navigator 3 isoform X6

    UniProtKB/TrEMBL
    A0A3P9C9F1
    Conserved Domains (4) summary
    cd00009
    Location:1875 → 1955
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:1872 → 1992
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1454 → 1504
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  7. XM_012915618.3 → XP_012771072.1  neuron navigator 3 isoform X7

    UniProtKB/TrEMBL
    A0A3P9C9F1
    Conserved Domains (4) summary
    cd00009
    Location:1861 → 1941
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:1858 → 1978
    AAA; ATPases associated with a variety of cellular activities
    cd00014
    Location:86 → 187
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cl23720
    Location:1440 → 1490
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  8. XM_012915619.3 → XP_012771073.1  neuron navigator 3 isoform X8

    Conserved Domains (3) summary
    cd00009
    Location:1543 → 1623
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    smart00382
    Location:1540 → 1660
    AAA; ATPases associated with a variety of cellular activities
    cl23720
    Location:1122 → 1172
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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