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arhgef39 Rho guanine nucleotide exchange factor (GEF) 39 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101474694, updated on 8-Mar-2024

Summary

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Gene symbol
arhgef39
Gene description
Rho guanine nucleotide exchange factor (GEF) 39
See related
Ensembl:ENSMZEG00005019139
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See arhgef39 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
12
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG17 NC_036796.1 (34963274..35034308, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531746.1 (2900..30059)

Linkage Group LG17 - NC_036796.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 121B Neighboring gene interleukin 17 receptor A1a Neighboring gene LIM domain only 3 Neighboring gene deoxyribose-phosphate aldolase (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho guanine nucleotide exchange factor 39
Names
Rho guanine nucleotide exchange factor 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036796.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    34963274..35034308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024805573.1 → XP_024661341.1  rho guanine nucleotide exchange factor 39 isoform X2

    Conserved Domains (2) summary
    pfam00621
    Location:30 → 186
    RhoGEF; RhoGEF domain
    cl17171
    Location:187 → 292
    PH-like; Pleckstrin homology-like domain

  2. XM_024805572.1 → XP_024661340.1  rho guanine nucleotide exchange factor 39 isoform X1

    UniProtKB/TrEMBL
    A0A3P9CUY1
    Related
    ENSMZEP00005025636.1, ENSMZET00005026469.1
    Conserved Domains (2) summary
    pfam00621
    Location:30 → 199
    RhoGEF; RhoGEF domain
    cl17171
    Location:225 → 335
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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