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adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101472245, updated on 8-Mar-2024

Summary

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Gene symbol
adamts5
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 5
See related
Ensembl:ENSMZEG00005005473
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
8
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG23 NC_036801.1 (36061829..36079705)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531741.1 (5687839..5705946)

Linkage Group LG23 - NC_036801.1Genomic Context describing neighboring genes Neighboring gene histone demethylase UTY Neighboring gene uncharacterized LOC105940932 Neighboring gene sodium- and chloride-dependent GABA transporter 2 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 1 Neighboring gene cysteine/tyrosine-rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036801.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    36061829..36079705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012919487.3 → XP_012774941.1  A disintegrin and metalloproteinase with thrombospondin motifs 5 isoform X1

    Conserved Domains (6) summary
    smart00209
    Location:567 → 619
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:260 → 470
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:260 → 473
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:58 → 164
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:731 → 849
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:483 → 553
    ADAM_CR; ADAM cysteine-rich

  2. XM_004552628.3 → XP_004552685.1  A disintegrin and metalloproteinase with thrombospondin motifs 5 isoform X2

    UniProtKB/TrEMBL
    A0A3P9BB44
    Related
    ENSMZEP00005007119.1, ENSMZET00005007427.1
    Conserved Domains (6) summary
    smart00209
    Location:562 → 614
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:260 → 465
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:260 → 468
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:58 → 164
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:726 → 844
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:478 → 548
    ADAM_CR; ADAM cysteine-rich
Nucleotide Protein
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