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ATG10 autophagy related 10 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101383970, updated on 8-Mar-2024

Summary

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Gene symbol
ATG10
Gene description
autophagy related 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450522.1 (2203145..2413027)

NW_004450522.1Genomic Context describing neighboring genes Neighboring gene single stranded DNA binding protein 2 Neighboring gene dnaJ homolog subfamily A member 1 pseudogene Neighboring gene nucleophosmin pseudogene Neighboring gene ATPase H+ transporting accessory protein 1 like Neighboring gene ribosomal protein S23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450522.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450522.1 Reference Oros_1.0 Primary Assembly

    Range
    2203145..2413027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004405617.2 → XP_004405674.1  ubiquitin-like-conjugating enzyme ATG10

    UniProtKB/TrEMBL
    A0A2U3WB96
    Conserved Domains (1) summary
    pfam03987
    Location:100 → 167
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
Nucleotide Protein
Heading Accession and Version

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