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OTUD7B OTU deubiquitinase 7B [ Orcinus orca (killer whale) ]

Gene ID: 101284475, updated on 8-Mar-2024

Summary

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Gene symbol
OTUD7B
Gene description
OTU deubiquitinase 7B
See related
EnsemblRapid:ENSOORG00010019800
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 1 NC_064559.1 (104763634..104817480)

Chromosome 1 - NC_064559.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117198530 Neighboring gene uncharacterized LOC125961353 Neighboring gene uncharacterized LOC117198528 Neighboring gene uncharacterized LOC117198527 Neighboring gene myotubularin related protein 11 Neighboring gene splicing factor 3b subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064559.1 Chromosome 1 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K11-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OTU domain-containing protein 7B
Names
OTU domain containing 7B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064559.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    104763634..104817480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004285131.3 → XP_004285179.1  OTU domain-containing protein 7B

    Related
    ENSOORP00010026224.1, ENSOORT00010029696.1
    Conserved Domains (3) summary
    cd14347
    Location:4 → 46
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    pfam01754
    Location:801 → 823
    zf-A20; A20-like zinc finger
    cl19932
    Location:189 → 359
    OTU; OTU-like cysteine protease

  2. XM_033415579.2 → XP_033271470.1  OTU domain-containing protein 7B

    Conserved Domains (3) summary
    cd14347
    Location:4 → 46
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    pfam01754
    Location:801 → 823
    zf-A20; A20-like zinc finger
    cl19932
    Location:189 → 359
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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