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PCGF2 polycomb group ring finger 2 [ Orcinus orca (killer whale) ]

Gene ID: 101276645, updated on 8-Mar-2024

Summary

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Gene symbol
PCGF2
Gene description
polycomb group ring finger 2
See related
EnsemblRapid:ENSOORG00010019472
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See PCGF2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 19 NC_064577.1 (43092986..43104332)

Chromosome 19 - NC_064577.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 3 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene CDGSH iron sulfur domain 3 Neighboring gene MLLT6, PHD finger containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064577.1 Chromosome 19 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables promoter-specific chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PRC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb group RING finger protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064577.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    43092986..43104332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012537758.3 → XP_012393212.1  polycomb group RING finger protein 2 isoform X4

    Conserved Domains (3) summary
    PHA03247
    Location:222 → 344
    PHA03247; large tegument protein UL36; Provisional
    cd16736
    Location:12 → 65
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:130 → 228
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  2. XM_033410873.2 → XP_033266764.1  polycomb group RING finger protein 2 isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:289 → 411
    PHA03247; large tegument protein UL36; Provisional
    cd16736
    Location:79 → 132
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:197 → 295
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  3. XM_049702567.1 → XP_049558524.1  polycomb group RING finger protein 2 isoform X2

    Related
    ENSOORP00010025759.1, ENSOORT00010029199.1

  4. XM_012537757.3 → XP_012393211.1  polycomb group RING finger protein 2 isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:289 → 411
    PHA03247; large tegument protein UL36; Provisional
    cd16736
    Location:79 → 132
    RING-HC_PCGF4; RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
    cd17164
    Location:197 → 295
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)

  5. XM_049702568.1 → XP_049558525.1  polycomb group RING finger protein 2 isoform X5

  6. XM_033410876.2 → XP_033266767.1  polycomb group RING finger protein 2 isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:234 → 356
    PHA03247; large tegument protein UL36; Provisional
    cd17164
    Location:142 → 240
    RAWUL_PCGF2; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 2 (PCGF2)
    cl17238
    Location:51 → 77
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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