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ehmt1b euchromatic histone-lysine N-methyltransferase 1b [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167635, updated on 8-Mar-2024

Summary

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Gene symbol
ehmt1b
Gene description
euchromatic histone-lysine N-methyltransferase 1b
See related
EnsemblRapid:ENSORLG00000013792
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
27
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (25875123..25928095)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (25883291..25936668)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111948350 Neighboring gene uncharacterized LOC111948292 Neighboring gene Sjogren syndrome nuclear autoantigen 1 Neighboring gene calcium channel, voltage-dependent, N type, alpha 1B subunit, b Neighboring gene collagen alpha-1(I) chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables p53 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase EHMT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    25875123..25928095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020707861.2 → XP_020563520.1  histone-lysine N-methyltransferase EHMT1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9LUJ9, H2MFC5
    Related
    ENSORLP00000017297.2, ENSORLT00000017298.3
    Conserved Domains (5) summary
    smart00317
    Location:1108 → 1229
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd00204
    Location:780 → 906
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:785 → 816
    ANK; ANK repeat [structural motif]
    pfam05033
    Location:995 → 1099
    Pre-SET; Pre-SET motif
    pfam12796
    Location:722 → 816
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_020707860.1 → XP_020563519.1  histone-lysine N-methyltransferase EHMT1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3I9U5, A0A3P9K7J6
    Related
    ENSORLP00000040506.1, ENSORLT00000030579.2
    Conserved Domains (5) summary
    smart00317
    Location:1160 → 1281
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd00204
    Location:832 → 958
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:837 → 868
    ANK; ANK repeat [structural motif]
    pfam05033
    Location:1047 → 1151
    Pre-SET; Pre-SET motif
    pfam12796
    Location:774 → 868
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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