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MTA3 metastasis associated 1 family member 3 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101033775, updated on 8-Mar-2024

Summary

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Gene symbol
MTA3
Gene description
metastasis associated 1 family member 3
See related
EnsemblRapid:ENSSBOG00000030404
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100918.1 (105555824..105743220, complement)

NW_024100918.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyanthranilate 3,4-dioxygenase Neighboring gene oxoeicosanoid receptor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L10-like Neighboring gene 40S ribosomal protein S15-like Neighboring gene 60S ribosomal protein L7a-like Neighboring gene 40S ribosomal protein S13-like Neighboring gene potassium voltage-gated channel modifier subfamily G member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100918 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metastasis-associated protein MTA3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100918.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    105555824..105743220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039479074.1 → XP_039335008.1  metastasis-associated protein MTA3 isoform X1

    UniProtKB/TrEMBL
    A0A2K6U950
    Related
    ENSSBOP00000028371.2, ENSSBOT00000045251.2
    Conserved Domains (5) summary
    cd11661
    Location:270 → 315
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:376 → 425
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:3 → 170
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:150 → 201
    ELM2; ELM2 domain
    pfam17226
    Location:461 → 537
    MTA_R1; MTA R1 domain

  2. XM_039479075.1 → XP_039335009.1  metastasis-associated protein MTA3 isoform X2

    UniProtKB/TrEMBL
    A0A2K6U950
    Related
    ENSSBOP00000028424.2, ENSSBOT00000045304.2
    Conserved Domains (5) summary
    cd11661
    Location:270 → 315
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:375 → 424
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:3 → 170
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:150 → 201
    ELM2; ELM2 domain
    pfam17226
    Location:460 → 536
    MTA_R1; MTA R1 domain
Nucleotide Protein
Heading Accession and Version

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