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TRPC4 transient receptor potential cation channel subfamily C member 4 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100957571, updated on 8-Mar-2024

Summary

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Gene symbol
TRPC4
Gene description
transient receptor potential cation channel subfamily C member 4
See related
Ensembl:ENSOGAG00000011017
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852549.1 (1050597..1313284, complement)

NW_003852549.1Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 1 Neighboring gene U4 spliceosomal RNA Neighboring gene MORF4 family-associated protein 1-like Neighboring gene ubiquitin fold modifier 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852549 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852549.1 Reference OtoGar3

    Range
    1050597..1313284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003799706.3 → XP_003799754.1  short transient receptor potential channel 4 isoform X1

    UniProtKB/TrEMBL
    H0X3X4
    Related
    ENSOGAP00000009864.2, ENSOGAT00000011024.2
    Conserved Domains (4) summary
    cd00204
    Location:66 → 170
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:19 → 751
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:178 → 237
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:124 → 169
    ANK; ANK repeat [structural motif]

  2. XM_023519068.1 → XP_023374836.1  short transient receptor potential channel 4 isoform X3

    UniProtKB/TrEMBL
    H0X3X4
    Conserved Domains (1) summary
    cl26777
    Location:17 → 576
    TRP_2; Transient receptor ion channel II

  3. XM_012811340.1 → XP_012666794.1  short transient receptor potential channel 4 isoform X2

    UniProtKB/TrEMBL
    H0X3X4
    Conserved Domains (4) summary
    cd00204
    Location:64 → 168
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:17 → 754
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:176 → 235
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:122 → 167
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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