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PIPOX pipecolic acid and sarcosine oxidase [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100946238, updated on 8-Mar-2024

Summary

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Gene symbol
PIPOX
Gene description
pipecolic acid and sarcosine oxidase
See related
Ensembl:ENSOGAG00000007383
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852507.1 (1141485..1156673, complement)

NW_003852507.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene myosin XVIIIA Neighboring gene TGFB1-induced anti-apoptotic factor 1 Neighboring gene seizure related 6 homolog Neighboring gene PHD finger protein 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852507 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-pipecolate oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sarcosine oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-lysine catabolic process to acetyl-CoA via L-pipecolate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal sarcosine oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852507.1 Reference OtoGar3

    Range
    1141485..1156673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003797132.3 → XP_003797180.1  peroxisomal sarcosine oxidase

    UniProtKB/TrEMBL
    H0WW64
    Related
    ENSOGAP00000006604.2, ENSOGAT00000007385.2
    Conserved Domains (2) summary
    TIGR01377
    Location:8 → 388
    soxA_mon; sarcosine oxidase, monomeric form
    pfam13450
    Location:12 → 38
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein
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