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VPS9D1 VPS9 domain containing 1 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100914427, updated on 8-Mar-2024

Summary

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Gene symbol
VPS9D1
Gene description
VPS9 domain containing 1
See related
Ensembl:ENSSHAG00000005671
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
C1H16orf7
Orthologs
human mouse all
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Genomic context

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See VPS9D1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 2 NC_045427.1 (45318682..45340234)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 1 Unlocalized Scaffold NW_003816779.1 (171978..191279, complement)

Chromosome 2 - NC_045427.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116421306 Neighboring gene FA complementation group A Neighboring gene zinc finger protein 276 Neighboring gene uncharacterized LOC100918431 Neighboring gene spermatogenesis associated 2 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VPS9 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045427.1 Reference mSarHar1.11 Primary Assembly

    Range
    45318682..45340234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031950107.1 → XP_031805967.1  VPS9 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A7N4UX08
    Related
    ENSSHAP00000022678.1, ENSSHAT00000030796.1
    Conserved Domains (1) summary
    pfam02204
    Location:538 → 648
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  2. XM_031950108.1 → XP_031805968.1  VPS9 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    G3VTL2
    Related
    ENSSHAP00000006517.2, ENSSHAT00000006573.2

  3. XM_031950109.1 → XP_031805969.1  VPS9 domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    pfam02204
    Location:462 → 572
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
Nucleotide Protein
Heading Accession and Version

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