Format

Send to:

Choose Destination

Vps9d1 VPS9 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 72325, updated on 31-Jan-2019

Summary

Official Symbol
Vps9d1provided by MGI
Official Full Name
VPS9 domain containing 1provided by MGI
Primary source
MGI:MGI:1914143
See related
Ensembl:ENSMUSG00000001062
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5DOS1; Vsp9d1; 1300018I17Rik; 2410004N05Rik
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 24.0), CNS E18 (RPKM 23.7) and 28 other tissues See more
Orthologs

Genomic context

See Vps9d1 in Genome Data Viewer
Location:
8; 8 E1
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (123242356..123254222, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (125766256..125778075, complement)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 33 Neighboring gene RIKEN cDNA 4933417D19 gene Neighboring gene cyclin-dependent kinase 10 Neighboring gene spermatogenesis associated 2-like Neighboring gene zinc finger protein (C2H2 type) 276 Neighboring gene Fanconi anemia, complementation group A Neighboring gene spire type actin nucleation factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
VPS9 domain-containing protein 1
Names
5-day ovary-specific transcript 1 protein
VSP9 domain containing 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310661.1NP_001297590.1  VPS9 domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001297590.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK028751, AK032561, BC057621, BQ033590
    Consensus CDS
    CCDS80942.1
    UniProtKB/Swiss-Prot
    Q8C190
    UniProtKB/TrEMBL
    Q3U280
    Related
    ENSMUSP00000113634.1, ENSMUST00000118279.1
    Conserved Domains (1) summary
    pfam02204
    Location:528644
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
  2. NM_028200.2NP_082476.1  VPS9 domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_082476.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
    Source sequence(s)
    AK005046, AK028751, AK032561, BQ033590, BU053861
    Consensus CDS
    CCDS52698.1
    UniProtKB/Swiss-Prot
    Q8C190
    Related
    ENSMUSP00000113575.1, ENSMUST00000122363.7
    Conserved Domains (1) summary
    pfam02204
    Location:528643
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

    Range
    123242356..123254222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531390.3XP_006531453.1  VPS9 domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    pfam02204
    Location:527642
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

RNA

  1. XR_001778476.1 RNA Sequence

    Related
    ENSMUST00000146136.7
  2. XR_001778475.1 RNA Sequence

    Related
    ENSMUST00000155869.7
  3. XR_001778477.1 RNA Sequence

    Related
    ENSMUST00000149490.7
  4. XR_878902.1 RNA Sequence

    Related
    ENSMUST00000130275.7
Support Center