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bbln bublin coiled coil protein [ Danio rerio (zebrafish) ]

Gene ID: 100856806, updated on 12-Sep-2024

Summary

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Official Symbol
bblnprovided by ZNC
Official Full Name
bublin coiled coil proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-111013-4
See related
Ensembl:ENSDARG00000086753 AllianceGenome:ZFIN:ZDB-GENE-111013-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gb:bc139872
Summary
Orthologous to human BBLN (bublin coiled coil protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (1219187..1223706)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (1164772..1169291)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene surfeit 4 Neighboring gene surfeit 2 Neighboring gene cdkn1a interacting zinc finger protein 1a Neighboring gene dynamin 1a Neighboring gene uncharacterized LOC137495542 Neighboring gene microRNA 199-1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
bublin coiled-coil protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303023.1 → NP_001289952.1  bublin coiled-coil protein

    Status: VALIDATED

    Source sequence(s)
    CABZ01048142, CABZ01048143, EH466521, EH557073
    UniProtKB/Swiss-Prot
    P0C8Y3
    UniProtKB/TrEMBL
    A0A8M1P658, F1QHR5
    Related
    ENSDARP00000109078.2, ENSDART00000129490.3
    Conserved Domains (1) summary
    pfam03670
    Location:1 → 72
    UPF0184; uncharacterized protein family (UPF0184)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    1219187..1223706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials