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C9orf16 chromosome 9 open reading frame 16 [ Homo sapiens (human) ]

Gene ID: 79095, updated on 21-Dec-2019

Summary

Official Symbol
C9orf16provided by HGNC
Official Full Name
chromosome 9 open reading frame 16provided by HGNC
Primary source
HGNC:HGNC:17823
See related
Ensembl:ENSG00000171159
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EST00098
Expression
Ubiquitous expression in adrenal (RPKM 41.7), brain (RPKM 23.9) and 25 other tissues See more
Orthologs

Genomic context

See C9orf16 in Genome Data Viewer
Location:
9q34.11
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (128159425..128163926)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (130922539..130926207)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr9.2942 Neighboring gene lipocalin 2 Neighboring gene CDKN1A interacting zinc finger protein 1 Neighboring gene dynamin 1 Neighboring gene Sharpr-MPRA regulatory region 8497

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4639, FLJ12823

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024112.4NP_077017.1  UPF0184 protein C9orf16

    See identical proteins and their annotated locations for NP_077017.1

    Status: VALIDATED

    Source sequence(s)
    BC001857, DB493059
    Consensus CDS
    CCDS6893.1
    UniProtKB/Swiss-Prot
    Q9BUW7
    Related
    ENSP00000362085.1, ENST00000372994.2
    Conserved Domains (1) summary
    pfam03670
    Location:183
    UPF0184; Uncharacterized protein family (UPF0184)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    128159425..128163926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011519004.1XP_011517306.1  UPF0184 protein C9orf16 isoform X1

    Conserved Domains (1) summary
    pfam03670
    Location:39110
    UPF0184; uncharacterized protein family (UPF0184)
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