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Tnfaip3 TNF alpha induced protein 3 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771931, updated on 8-Mar-2024

Summary

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Gene symbol
Tnfaip3
Gene description
TNF alpha induced protein 3
See related
Ensembl:ENSCGRG00015020464
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Tnfaip3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613627.1 (1623525..1639051, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (270721832..270737376)

NW_003613627.1Genomic Context describing neighboring genes Neighboring gene sperm motility kinase Z-like Neighboring gene uncharacterized LOC118238362 Neighboring gene oligodendrocyte transcription factor 3 Neighboring gene thymosin beta-4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor alpha-induced protein 3
Names
tumor necrosis factor, alpha-induced protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613627.1 Reference CriGri_1.0 Primary Assembly

    Range
    1623525..1639051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007651169.4 → XP_007649359.1  tumor necrosis factor alpha-induced protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007649359.1

    UniProtKB/TrEMBL
    A0A9J7FDR7
    Conserved Domains (2) summary
    smart00259
    Location:628 → 653
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:98 → 257
    OTU; OTU-like cysteine protease

  2. XM_007651164.4 → XP_007649354.1  tumor necrosis factor alpha-induced protein 3 isoform X2

    See identical proteins and their annotated locations for XP_007649354.1

    UniProtKB/TrEMBL
    G3GW61
    Conserved Domains (2) summary
    smart00259
    Location:745 → 770
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:98 → 257
    OTU; OTU-like cysteine protease

  3. XM_003496545.5 → XP_003496593.2  tumor necrosis factor alpha-induced protein 3 isoform X1

    See identical proteins and their annotated locations for XP_003496593.2

    UniProtKB/TrEMBL
    A0A9J7FEC0
    Conserved Domains (2) summary
    smart00259
    Location:783 → 808
    ZnF_A20; A20-like zinc fingers
    pfam02338
    Location:136 → 295
    OTU; OTU-like cysteine protease

RNA

  1. XR_003492117.2 RNA Sequence

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    270721832..270737376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027401941.2 → XP_027257742.1  tumor necrosis factor alpha-induced protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FDR7

  2. XM_027401940.2 → XP_027257741.1  tumor necrosis factor alpha-induced protein 3 isoform X2

    UniProtKB/TrEMBL
    G3GW61
    Related
    ENSCGRP00015027028.1, ENSCGRT00015033111.2

  3. XM_027401939.2 → XP_027257740.1  tumor necrosis factor alpha-induced protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A9J7FEC0
    Related
    ENSCGRP00015027007.1, ENSCGRT00015033085.2

RNA

  1. XR_003482609.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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