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Dmtf1 cyclin D binding myb like transcription factor 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100732106, updated on 8-Mar-2024

Summary

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Gene symbol
Dmtf1
Gene description
cyclin D binding myb like transcription factor 1
See related
Ensembl:ENSCPOG00000002780
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947485.1 (420184..461315, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176388.1 (25077782..25128653)

NW_026947485.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100722900 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene carnitine O-octanoyltransferase Neighboring gene transmembrane protein 243 Neighboring gene uncharacterized LOC134473292 Neighboring gene endosome-lysosome associated apoptosis and autophagy regulator family member 2 Neighboring gene glutamate metabotropic receptor 3 Neighboring gene uncharacterized LOC134472568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-D-binding Myb-like transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947485.1 Reference mCavPor4.1

    Range
    420184..461315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005003647.4 → XP_005003704.1  cyclin-D-binding Myb-like transcription factor 1 isoform X2

    Conserved Domains (4) summary
    smart00717
    Location:273 → 329
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:337 → 387
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:273 → 328
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:227 → 283
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. XM_063237252.1 → XP_063093322.1  cyclin-D-binding Myb-like transcription factor 1 isoform X7

  3. XM_013152411.3 → XP_013007865.1  cyclin-D-binding Myb-like transcription factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A286XE50
    Related
    ENSCPOP00000023730.1
    Conserved Domains (4) summary
    smart00717
    Location:274 → 330
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:338 → 388
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:274 → 329
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:228 → 284
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  4. XM_063237228.1 → XP_063093298.1  cyclin-D-binding Myb-like transcription factor 1 isoform X4

  5. XM_063237221.1 → XP_063093291.1  cyclin-D-binding Myb-like transcription factor 1 isoform X3

  6. XM_003469821.5 → XP_003469869.1  cyclin-D-binding Myb-like transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_003469869.1

    UniProtKB/TrEMBL
    H0UZC5
    Conserved Domains (3) summary
    pfam00249
    Location:274 → 329
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:228 → 284
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    cl28544
    Location:105 → 378
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  7. XM_005003646.4 → XP_005003703.1  cyclin-D-binding Myb-like transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_005003703.1

    UniProtKB/TrEMBL
    H0UZC5
    Conserved Domains (3) summary
    pfam00249
    Location:274 → 329
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:228 → 284
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    cl28544
    Location:105 → 378
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  8. XM_013152410.3 → XP_013007864.1  cyclin-D-binding Myb-like transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_013007864.1

    UniProtKB/TrEMBL
    H0UZC5
    Related
    ENSCPOP00000002525.2
    Conserved Domains (3) summary
    pfam00249
    Location:274 → 329
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:228 → 284
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    cl28544
    Location:105 → 378
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  9. XM_013152412.3 → XP_013007866.1  cyclin-D-binding Myb-like transcription factor 1 isoform X6

    Conserved Domains (4) summary
    smart00717
    Location:183 → 239
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:247 → 297
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:183 → 238
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:137 → 193
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  10. XM_063237243.1 → XP_063093313.1  cyclin-D-binding Myb-like transcription factor 1 isoform X6

Nucleotide Protein
Heading Accession and Version

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