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Trim17 tripartite motif containing 17 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100719636, updated on 8-Mar-2024

Summary

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Gene symbol
Trim17
Gene description
tripartite motif containing 17
See related
Ensembl:ENSCPOG00000004213
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947504.1 (5569397..5577138, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176413.1 (569609..575340, complement)

NW_026947504.1Genomic Context describing neighboring genes Neighboring gene obscurin-like Neighboring gene tripartite motif containing 11 Neighboring gene histone H2A type 1-C Neighboring gene H3.4 histone, cluster member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947504.1 Reference mCavPor4.1

    Range
    5569397..5577138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003477325.4 → XP_003477373.1  E3 ubiquitin-protein ligase TRIM17

    UniProtKB/TrEMBL
    H0V2M5
    Related
    ENSCPOP00000003799.2
    Conserved Domains (4) summary
    smart00336
    Location:94 → 135
    BBOX; B-Box-type zinc finger
    pfam13863
    Location:150 → 252
    DUF4200; Domain of unknown function (DUF4200)
    cd15812
    Location:296 → 472
    SPRY_PRY_TRIM17; PRY/SPRY domain of tripartite motif-binding protein 17 (TRIM17), also known as testis RING finger protein (terf)
    cl17238
    Location:16 → 65
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
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