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PTGDS prostaglandin D2 synthase [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100672974, updated on 11-Apr-2024

Summary

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Gene symbol
PTGDS
Gene description
prostaglandin D2 synthase
See related
EnsemblRapid:ENSLAFG00000003721
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See PTGDS in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 9 NC_087350.1 (122363313..122366818, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573616.1 (314499..318737, complement)

Chromosome 9 - NC_087350.1Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 3 Neighboring gene PAXX non-homologous end joining factor Neighboring gene neutrophil gelatinase-associated lipocalin-like Neighboring gene epididymal-specific lipocalin-12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin-H2 D-isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087350.1 Reference mLoxAfr1.hap2

    Range
    122363313..122366818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023542187.2 → XP_023397955.1  prostaglandin-H2 D-isomerase isoform X2

    UniProtKB/TrEMBL
    G3SSY0
    Related
    ENSLAFP00000003101.3, ENSLAFT00000003720.4
    Conserved Domains (1) summary
    pfam00061
    Location:40 → 184
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

  2. XM_023542185.2 → XP_023397953.1  prostaglandin-H2 D-isomerase isoform X1

    Conserved Domains (1) summary
    pfam00061
    Location:40 → 184
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
Nucleotide Protein
Heading Accession and Version

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