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BARHL1 BarH like homeobox 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100656480, updated on 11-Apr-2024

Summary

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Gene symbol
BARHL1
Gene description
BarH like homeobox 1
See related
EnsemblRapid:ENSLAFG00000015377
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See BARHL1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 9 NC_087350.1 (42935843..42942563, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573426.1 (25577145..25584699, complement)

Chromosome 9 - NC_087350.1Genomic Context describing neighboring genes Neighboring gene adenylate kinase 8 Neighboring gene general transcription factor IIIC subunit 4 Neighboring gene DEAD-box helicase 31 Neighboring gene cilia and flagella associated protein 77 Neighboring gene transcription termination factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
barH-like 1 homeobox protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087350.1 Reference mLoxAfr1.hap2

    Range
    42935843..42942563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003407498.3 → XP_003407546.1  barH-like 1 homeobox protein

    UniProtKB/TrEMBL
    G3TF12
    Related
    ENSLAFP00000012884.1, ENSLAFT00000015375.2
    Conserved Domains (1) summary
    pfam00046
    Location:182 → 234
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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