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BARHL1 BarH like homeobox 1 [ Homo sapiens (human) ]

Gene ID: 56751, updated on 3-Oct-2020

Summary

Official Symbol
BARHL1provided by HGNC
Official Full Name
BarH like homeobox 1provided by HGNC
Primary source
HGNC:HGNC:953
See related
Ensembl:ENSG00000125492 MIM:605211
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See BARHL1 in Genome Data Viewer
Location:
9q34.13
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (132582606..132590252)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (135457993..135465640)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376304 Neighboring gene RNA, U5D small nuclear 2, pseudogene Neighboring gene cilia and flagella associated protein 77 Neighboring gene DEAD-box helicase 31 Neighboring gene general transcription factor IIIC subunit 4 Neighboring gene Sharpr-MPRA regulatory region 7884 Neighboring gene adenylate kinase 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
midbrain development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
neuron migration IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
barH-like 1 homeobox protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020064.4NP_064448.1  barH-like 1 homeobox protein

    See identical proteins and their annotated locations for NP_064448.1

    Status: VALIDATED

    Source sequence(s)
    AF325688, AK054797
    Consensus CDS
    CCDS6950.1
    UniProtKB/Swiss-Prot
    Q9BZE3
    Related
    ENSP00000263610.2, ENST00000263610.7
    Conserved Domains (1) summary
    pfam00046
    Location:182235
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    132582606..132590252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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