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ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A [ Sus scrofa (pig) ]

Gene ID: 100625697, updated on 8-Mar-2024

Summary

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Official Symbol
ANKS1Aprovided by VGNC
Official Full Name
ankyrin repeat and sterile alpha motif domain containing 1Aprovided by VGNC
Primary source
VGNC:VGNC:85348
See related
Ensembl:ENSSSCG00000001534
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 33.1), lung (RPKM 8.2) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (30812925..30995369)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (35661335..35766115)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene cell division control protein 42 homolog pseudogene Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene TATA-box binding protein associated factor 11 Neighboring gene t-complex 11 Neighboring gene signal peptide, CUB domain and EGF like domain containing 3 Neighboring gene zinc finger protein 76 Neighboring gene DEF6 guanine nucleotide exchange factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Fahrenkrug SC, et al. Mamm Genome, 2002 Aug. PMID 12226715
  2. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SAM domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246264.2 → NP_001233193.1  ankyrin repeat and SAM domain-containing protein 1A

    See identical proteins and their annotated locations for NP_001233193.1

    Status: VALIDATED

    Source sequence(s)
    BM484682, CU468445, EW200633, HQ630074
    UniProtKB/TrEMBL
    A0A4X1T3T8, A0A8D1YD17, F8SIP9
    Related
    ENSSSCP00000053489.2, ENSSSCT00000056822.3
    Conserved Domains (7) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    smart00454
    Location:719 → 778
    SAM; Sterile alpha motif
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1090
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    pfam12796
    Location:205 → 296
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    30812925..30995369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021098223.1 → XP_020953882.1  ankyrin repeat and SAM domain-containing protein 1A isoform X10

    UniProtKB/TrEMBL
    A0A287AJ68, A0A480L7P7, A0A4X1T4K9, A0A8D1JD92
    Related
    ENSSSCP00000043935.3, ENSSSCT00000048052.3
    Conserved Domains (6) summary
    cd09499
    Location:695 → 761
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:766 → 830
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 200
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:924 → 1069
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:78 → 108
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:249 → 288
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_021098214.1 → XP_020953873.1  ankyrin repeat and SAM domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A4X1T4G4, A0A8D0UD10
    Conserved Domains (7) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1166
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:845 → 1019
    Atrophin-1; Atrophin-1 family

  3. XM_021098215.1 → XP_020953874.1  ankyrin repeat and SAM domain-containing protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A481C1E6, A0A8D0Z964, A0A8D1DIW0
    Conserved Domains (7) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1166
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:845 → 1019
    Atrophin-1; Atrophin-1 family

  4. XM_021098217.1 → XP_020953876.1  ankyrin repeat and SAM domain-containing protein 1A isoform X4

    UniProtKB/TrEMBL
    A0A4X1T4G4, A0A8D0UD10
    Conserved Domains (7) summary
    cd09499
    Location:685 → 751
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:756 → 820
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:914 → 1135
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:814 → 988
    Atrophin-1; Atrophin-1 family

  5. XM_021098218.1 → XP_020953877.1  ankyrin repeat and SAM domain-containing protein 1A isoform X5

    UniProtKB/TrEMBL
    A0A4X1T4L9, A0A8D0SAR3, A0A8D0Y7K6, A0A8D0Z977, A0A8D1DID1, F1RZ13
    Conserved Domains (7) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1166
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:845 → 1019
    Atrophin-1; Atrophin-1 family

  6. XM_021098219.1 → XP_020953878.1  ankyrin repeat and SAM domain-containing protein 1A isoform X6

    UniProtKB/TrEMBL
    A0A4X1T3T8, A0A8D1YD17
    Conserved Domains (7) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1166
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:845 → 1019
    Atrophin-1; Atrophin-1 family

  7. XM_021098216.1 → XP_020953875.1  ankyrin repeat and SAM domain-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0A8D0SB81
    Conserved Domains (7) summary
    cd09499
    Location:695 → 761
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:766 → 830
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 200
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:924 → 1145
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:78 → 108
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:249 → 288
    Ank_2; Ankyrin repeats (3 copies)
    cl26464
    Location:824 → 998
    Atrophin-1; Atrophin-1 family

  8. XM_021098220.1 → XP_020953879.1  ankyrin repeat and SAM domain-containing protein 1A isoform X7

    UniProtKB/TrEMBL
    A0A4X1T4G4, A0A8D0UD10, A0A8W4FKM1
    Related
    ENSSSCP00000079879.1, ENSSSCT00000095346.1
    Conserved Domains (6) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1090
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)

  9. XM_021098221.1 → XP_020953880.1  ankyrin repeat and SAM domain-containing protein 1A isoform X8

    UniProtKB/TrEMBL
    A0A4X1T4L9, A0A5G2QPU6, A0A8D0SAR3, A0A8D0Y7K6, A0A8D0Z977, A0A8D1DID1, F1RZ13
    Related
    ENSSSCP00000066740.1, ENSSSCT00000089980.2
    Conserved Domains (6) summary
    cd09499
    Location:716 → 782
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:787 → 851
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 221
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:945 → 1090
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:167 → 198
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:270 → 309
    Ank_2; Ankyrin repeats (3 copies)

  10. XM_021098222.1 → XP_020953881.1  ankyrin repeat and SAM domain-containing protein 1A isoform X9

    UniProtKB/TrEMBL
    A0A480LF20, A0A480MNQ3
    Related
    ENSSSCP00000066561.1, ENSSSCT00000068005.1
    Conserved Domains (6) summary
    cd09499
    Location:695 → 761
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:766 → 830
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:72 → 200
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:924 → 1069
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:78 → 108
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:249 → 288
    Ank_2; Ankyrin repeats (3 copies)

  11. XM_021098224.1 → XP_020953883.1  ankyrin repeat and SAM domain-containing protein 1A isoform X11

    UniProtKB/TrEMBL
    A0A8D0KLP8
    Conserved Domains (6) summary
    cd09499
    Location:521 → 587
    SAM_AIDA1AB-like_repeat1; SAM domain of AIDA1AB-like proteins, repeat 1
    cd09500
    Location:592 → 656
    SAM_AIDA1AB-like_repeat2; SAM domain of AIDA1AB-like proteins, repeat 2
    cd00204
    Location:1 → 109
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd01274
    Location:750 → 971
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:7 → 36
    ANK; ANK repeat [structural motif]
    cl26464
    Location:650 → 824
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_002345583.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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