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RETREG1 reticulophagy regulator 1 [ Sus scrofa (pig) ]

Gene ID: 100625174, updated on 8-Mar-2024

Summary

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Official Symbol
RETREG1provided by VGNC
Official Full Name
reticulophagy regulator 1provided by VGNC
Primary source
VGNC:VGNC:92223
See related
Ensembl:ENSSSCG00000016792
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
FAM134B
Expression
Ubiquitous expression in longissimus dorsi muscle (RPKM 49.5), heart (RPKM 46.2) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RETREG1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (5726493..5879461, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (6170402..6324535, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene 6.8 kDa mitochondrial proteolipid pseudogene Neighboring gene zinc finger protein 622 Neighboring gene myosin X Neighboring gene uncharacterized LOC102167708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. The novel gene pFAM134B positively regulates fat deposition in the subcutaneous fat of Sus scrofa. Yuan Z, et al. Biochem Biophys Res Commun, 2014 Nov 28. PMID 25450692
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulophagy receptor FAM134B
Names
family with sequence similarity 134 member B
fat deposition protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    5726493..5879461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003483804.4 → XP_003483852.1  reticulophagy receptor FAM134B isoform X1

    UniProtKB/TrEMBL
    A0A480E929, A0A4X1TMQ2, A0A8D1VYE2
    Related
    ENSSSCP00000031296.2, ENSSSCT00000049101.3
    Conserved Domains (1) summary
    pfam02453
    Location:80 → 228
    Reticulon; Reticulon

  2. XM_005672396.3 → XP_005672453.1  reticulophagy receptor FAM134B isoform X2

    See identical proteins and their annotated locations for XP_005672453.1

    UniProtKB/TrEMBL
    A0A287BII5, A0A4X1TQI4, A0A5G2QGI7, A0A8D0RGS3, A0A8D1VXI3
    Related
    ENSSSCP00000061111.1, ENSSSCT00000080484.1

  3. XM_003359728.5 → XP_003359776.2  reticulophagy receptor FAM134B isoform X2

    See identical proteins and their annotated locations for XP_003359776.2

    UniProtKB/TrEMBL
    A0A287BII5, A0A4X1TQI4, A0A5G2QGI7, A0A8D0RGS3, A0A8D1VXI3
Nucleotide Protein Strain
Heading Accession and Version

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