U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SAAL1 serum amyloid A like 1 [ Sus scrofa (pig) ]

Gene ID: 100526207, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SAAL1
Gene description
serum amyloid A like 1
See related
Ensembl:ENSSSCG00000035393
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 3.6), ovary (RPKM 3.4) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SAAL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (41028673..41054578)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (44085678..44108807)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L4-like Neighboring gene serum amyloid A-3 protein Neighboring gene tryptophan hydroxylase 1 Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene uncharacterized LOC106509404

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SAAL1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    41028673..41054578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122940.4 → XP_003122988.1  protein SAAL1 isoform X1

    UniProtKB/TrEMBL
    A0A480JMK5, A0A480Y301, A0A4X1T9U9, A0A8D1QD14
    Related
    ENSSSCP00000059741.1, ENSSSCT00000078022.2
    Conserved Domains (1) summary
    cd13394
    Location:91 → 150
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins

  2. XM_013994508.2 → XP_013849962.1  protein SAAL1 isoform X3

    UniProtKB/TrEMBL
    A0A287A4H1, A0A8D1JT45
    Related
    ENSSSCP00000038673.2, ENSSSCT00000056869.3
    Conserved Domains (1) summary
    cd13394
    Location:39 → 112
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins

  3. XM_005661096.3 → XP_005661153.1  protein SAAL1 isoform X2

    UniProtKB/TrEMBL
    A0A480VLR8
    Related
    ENSSSCP00000059652.1, ENSSSCT00000083000.1
    Conserved Domains (1) summary
    cd13394
    Location:91 → 150
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.