NRXN2 neurexin 2 [Sus scrofa (pig)] - Gene

Summary

Gene symbol: NRXN2
Gene description: neurexin 2
Gene type: protein coding
RefSeq status: MODEL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Biased expression in mixtures (RPKM 3.7) and spleen (RPKM 0.8) See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	2	NC_010444.4 (7454771..7554180)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	2	NC_010444.3 (6576810..6685737)

Chromosome 2 - NC_010444.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

ECD24186 (e-PCR)
- UniSTS:305170

REN55905 (e-PCR)
- UniSTS:380705

REN55695 (e-PCR)
- UniSTS:380495

REN55696 (e-PCR)
- UniSTS:380496

REN55698 (e-PCR)
- UniSTS:380498

REN55701 (e-PCR)
- UniSTS:380501

REN55703 (e-PCR)
- UniSTS:380503

REN55704 (e-PCR)
- UniSTS:380504

REN55707 (e-PCR)
- UniSTS:380507

REN55975 (e-PCR)
- UniSTS:380775

REN55998 (e-PCR)
- UniSTS:380798

REN55999 (e-PCR)
- UniSTS:380799

REN56000 (e-PCR)
- UniSTS:380800

REN55768 (e-PCR)
- UniSTS:380568

REN55780 (e-PCR)
- UniSTS:380580

REN56067 (e-PCR)
- UniSTS:380867

REN56068 (e-PCR)
- UniSTS:380868

ECD01721 (e-PCR)
- UniSTS:282822

ECD13369 (e-PCR)
- UniSTS:294399

Homology

NCBI Orthologs

Orthologs from OrthoDB

General protein information

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Preferred Names: LOW QUALITY PROTEIN: neurexin-2-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010444.4 Reference Sscrofa11.1 Primary Assembly

Range

7454771..7554180

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021082873.1 → XP_020938532.1 LOW QUALITY PROTEIN: neurexin-2-beta

UniProtKB/TrEMBL

A0A8D1TCT8

Conserved Domains (5) summary

smart00282
Location:403 → 553

LamG; Laminin G domain

cd00054
Location:581 → 614

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

pfam01034
Location:1524 → 1563

Syndecan; Syndecan domain

pfam02210
Location:833 → 961

Laminin_G_2; Laminin G domain

cl26464
Location:1320 → 1519

Atrophin-1; Atrophin-1 family