U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CUL1 cullin 1 [ Sus scrofa (pig) ]

Gene ID: 100524037, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
CUL1provided by VGNC
Official Full Name
cullin 1provided by VGNC
Primary source
VGNC:VGNC:87087
See related
Ensembl:ENSSSCG00000015455
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 31.4), spleen (RPKM 12.3) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CUL1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (109454523..109559114, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (120392339..120495724, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255506 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene uncharacterized LOC110255507 Neighboring gene enhancer of zeste 2 polycomb repressive complex 2 subunit Neighboring gene contactin associated protein 2 Neighboring gene 60S ribosomal protein L22-like 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cullin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    109454523..109559114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021063586.1 → XP_020919245.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  2. XM_021063584.1 → XP_020919243.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  3. XM_021063587.1 → XP_020919246.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  4. XM_021063582.1 → XP_020919241.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  5. XM_021063585.1 → XP_020919244.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  6. XM_021063583.1 → XP_020919242.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Related
    ENSSSCP00000033495.1, ENSSSCT00000058326.2
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain

  7. XM_021063588.1 → XP_020919247.1  cullin-1

    UniProtKB/TrEMBL
    A0A480K353, A0A4X1UR52, A0A8D0K6H4, A0A8D1I026
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 660
    Cullin; Cullin family
    pfam10557
    Location:706 → 767
    Cullin_Nedd8; Cullin protein neddylation domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous