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TMEM45A transmembrane protein 45A [ Sus scrofa (pig) ]

Gene ID: 100522901, updated on 8-Mar-2024

Summary

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Official Symbol
TMEM45Aprovided by VGNC
Official Full Name
transmembrane protein 45Aprovided by VGNC
Primary source
VGNC:VGNC:94182
See related
Ensembl:ENSSSCG00000011965
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 7.9), subcutaneous adipose (RPKM 7.9) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TMEM45A in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (158417971..158515072, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (168094158..168191202, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene ABI family member 3 binding protein Neighboring gene trafficking from ER to golgi regulator Neighboring gene adhesion G protein-coupled receptor G7 Neighboring gene small nuclear ribonucleoprotein-associated protein B pseudogene Neighboring gene protein kish-A pseudogene Neighboring gene leukemia NUP98 fusion partner 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
transmembrane protein 45A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    158417971..158515072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003132703.3 → XP_003132751.1  transmembrane protein 45A

    See identical proteins and their annotated locations for XP_003132751.1

    UniProtKB/TrEMBL
    A0A4X1UVK8, A0A8D0MDX9, A0A8D0QHM5, A0A8D0VY99, A0A8D2A0T6, F1SKZ6
    Related
    ENSSSCP00000012747.2, ENSSSCT00000013092.5
    Conserved Domains (1) summary
    pfam04819
    Location:124 → 231
    DUF716; Family of unknown function (DUF716)

  2. XM_013981108.2 → XP_013836562.1  transmembrane protein 45A

    UniProtKB/TrEMBL
    A0A4X1UVK8, A0A8D0MDX9, A0A8D0QHM5, A0A8D0VY99, A0A8D2A0T6, F1SKZ6
    Conserved Domains (1) summary
    pfam04819
    Location:124 → 231
    DUF716; Family of unknown function (DUF716)
Nucleotide Protein
Heading Accession and Version

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