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STX3 syntaxin 3 [ Sus scrofa (pig) ]

Gene ID: 100520886, updated on 17-Aug-2024

Summary

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Official Symbol
STX3provided by VGNC
Official Full Name
syntaxin 3provided by VGNC
Primary source
VGNC:VGNC:93591
See related
Ensembl:ENSSSCG00000013119
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in kidney (RPKM 9.4), ovary (RPKM 4.2) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See STX3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (11694788..11739858, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (11061370..11088238)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene cobalamin binding intrinsic factor Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene olfactory receptor 10V1-like Neighboring gene olfactory receptor 10V1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytic insertion of neurotransmitter receptor to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    11694788..11739858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021082987.1 → XP_020938646.1  syntaxin-3 isoform X4

    UniProtKB/TrEMBL
    A0A4X1VN03, A0A8D1HRP8
    Related
    ENSSSCP00000043335.2, ENSSSCT00000044663.3
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    pfam05739
    Location:228 → 278
    SNARE; SNARE domain

  2. XM_021082986.1 → XP_020938645.1  syntaxin-3 isoform X4

    UniProtKB/TrEMBL
    A0A4X1VN03, A0A8D1HRP8
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    pfam05739
    Location:228 → 278
    SNARE; SNARE domain

  3. XM_021082988.1 → XP_020938647.1  syntaxin-3 isoform X5

    UniProtKB/TrEMBL
    A0A4X1VMF8
    Conserved Domains (1) summary
    pfam00804
    Location:32 → 225
    Syntaxin

  4. XM_021082985.1 → XP_020938644.1  syntaxin-3 isoform X3

    UniProtKB/TrEMBL
    A0A286ZQQ0, A0A8D0Y8K3, A0A8D1I015
    Related
    ENSSSCP00000033948.1, ENSSSCT00000044532.2
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  5. XM_021082979.1 → XP_020938638.1  syntaxin-3 isoform X1

    UniProtKB/TrEMBL
    A0A287AH59, A0A4X1VIE3, A0A4X1VNX6
    Related
    ENSSSCP00000043213.1, ENSSSCT00000039939.3
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  6. XM_021082982.1 → XP_020938641.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A480SP96, A0A4X1VQ58, A0A8D1KCK4, A0A8D1XZH9
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  7. XM_021082980.1 → XP_020938639.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A480SP96, A0A4X1VQ58, A0A8D1KCK4, A0A8D1XZH9
    Related
    ENSSSCP00000042626.2, ENSSSCT00000053592.2
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  8. XM_021082983.1 → XP_020938642.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A480SP96, A0A4X1VQ58, A0A8D1KCK4, A0A8D1XZH9
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  9. XM_021082984.1 → XP_020938643.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A480SP96, A0A4X1VQ58, A0A8D1KCK4, A0A8D1XZH9
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

  10. XM_021082981.1 → XP_020938640.1  syntaxin-3 isoform X2

    UniProtKB/TrEMBL
    A0A480SP96, A0A4X1VQ58, A0A8D1KCK4, A0A8D1XZH9
    Conserved Domains (2) summary
    pfam00804
    Location:32 → 226
    Syntaxin
    cl22856
    Location:194 → 260
    SNARE; SNARE motif

RNA

  1. XR_002341479.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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