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CELF3 CUGBP Elav-like family member 3 [ Sus scrofa (pig) ]

Gene ID: 100515828, updated on 8-Mar-2024

Summary

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Official Symbol
CELF3provided by VGNC
Official Full Name
CUGBP Elav-like family member 3provided by VGNC
Primary source
VGNC:VGNC:86538
See related
Ensembl:ENSSSCG00000006618
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in mixtures (RPKM 2.5), kidney (RPKM 2.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CELF3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (97513563..97535426)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (106757592..106772378, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260325 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin 27 Neighboring gene tuftelin 1 Neighboring gene cingulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    97513563..97535426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013997147.2 → XP_013852601.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A287AAF7, A0A8D1CXB1, A0A8D1FY24
    Conserved Domains (3) summary
    cd12639
    Location:299 → 377
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 384
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_013997145.2 → XP_013852599.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A287AAF7, A0A8D1CXB1, A0A8D1FY24
    Related
    ENSSSCP00000040930.2, ENSSSCT00000049625.2
    Conserved Domains (3) summary
    cd12639
    Location:299 → 377
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 384
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_003481451.4 → XP_003481499.1  CUGBP Elav-like family member 3 isoform X4

    See identical proteins and their annotated locations for XP_003481499.1

    UniProtKB/TrEMBL
    A0A4X1W1H7, A0A8D1CXB1, A0A8D1KLC3, F1ST15
    Related
    ENSSSCP00000007057.4, ENSSSCT00000007252.4
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 351
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:375 → 453
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  4. XM_013997143.2 → XP_013852597.1  CUGBP Elav-like family member 3 isoform X5

    UniProtKB/TrEMBL
    A0A8D1CXB1, A0A8D1GTG1
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:374 → 452
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  5. XM_013997144.2 → XP_013852598.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A8D1CXB1
    Conserved Domains (4) summary
    PRK12323
    Location:213 → 350
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:374 → 452
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  6. XM_013997141.2 → XP_013852595.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A4X1W2P2, A0A8D0LK54
    Conserved Domains (3) summary
    cd12635
    Location:125 → 205
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:405 → 483
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:80 → 119
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_013997142.2 → XP_013852596.1  CUGBP Elav-like family member 3 isoform X3

    UniProtKB/TrEMBL
    A0A4X1W2P2, A0A8D0LK54
    Conserved Domains (3) summary
    cd12635
    Location:124 → 204
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:405 → 483
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:80 → 119
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_013997140.2 → XP_013852594.1  CUGBP Elav-like family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A287BI25, A0A4X1W0V8, A0A4X1W2P2, A0A8D0LK54, A0A8D1CXA9
    Related
    ENSSSCP00000056250.1, ENSSSCT00000063688.3
    Conserved Domains (3) summary
    cd12635
    Location:125 → 205
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:406 → 484
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:80 → 119
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_002343441.1 RNA Sequence

  2. XR_002343440.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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