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PCED1A PC-esterase domain containing 1A [ Sus scrofa (pig) ]

Gene ID: 100511604, updated on 8-Mar-2024

Summary

Official Symbol
PCED1Aprovided by VGNC
Official Full Name
PC-esterase domain containing 1Aprovided by VGNC
Primary source
VGNC:VGNC:95786
See related
Ensembl:ENSSSCG00000007168
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
FAM113A
Expression
Ubiquitous expression in ovary (RPKM 36.2), subcutaneous adipose (RPKM 17.4) and 8 other tissues See more
Orthologs
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Genomic context

See PCED1A in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (32825984..32831045)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (37196806..37201867)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type A Neighboring gene VPS16 core subunit of CORVET and HOPS complexes Neighboring gene chromosome 17 C20orf141 homolog Neighboring gene transmembrane protein 239

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
PC-esterase domain-containing protein 1A
Names
family with sequence similarity 113, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243864.1NP_001230793.1  PC-esterase domain-containing protein 1A

    Status: VALIDATED

    Source sequence(s)
    AK347440
    UniProtKB/TrEMBL
    A0A8D0PBM0
    Related
    ENSSSCP00000007630.2, ENSSSCT00000007841.5
    Conserved Domains (1) summary
    cd01842
    Location:34266
    SGNH_hydrolase_like_5; SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    32825984..32831045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005672778.1XP_005672835.1  PC-esterase domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A8D1QIP8, F1S8A2
    Conserved Domains (1) summary
    cd01842
    Location:34266
    SGNH_hydrolase_like_5; SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site ...