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agbl3 AGBL carboxypeptidase 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490042, updated on 18-Sep-2024

Summary

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Official Symbol
agbl3provided by Xenbase
Official Full Name
AGBL carboxypeptidase 3provided by Xenbase
Primary source
Xenbase:XB-GENE-995570
See related
Ensembl:ENSXETG00000020238
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (6842466..6883789, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683467.1 (196902..234989)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene cell cycle regulator of NHEJ Neighboring gene transmembrane protein 140 Neighboring gene uncharacterized LOC116409455 Neighboring gene intestine specific homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables metallocarboxypeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metallocarboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in centriole IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
cytosolic carboxypeptidase 3
Names
ATP/GTP binding protein-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    6842466..6883789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018089881.2 → XP_017945370.2  cytosolic carboxypeptidase 3 isoform X2

    UniProtKB/TrEMBL
    A0A1B8Y4H0, A0A6I8SZG2
    Related
    ENSXETP00000100959.2, ENSXETT00000071405.2
    Conserved Domains (2) summary
    cd06907
    Location:323 → 578
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:175 → 301
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain

  2. XM_031898553.1 → XP_031754413.1  cytosolic carboxypeptidase 3 isoform X1

    UniProtKB/TrEMBL
    A0A1B8Y4H0, F6U861
    Related
    ENSXETP00000043668.5, ENSXETT00000043668.5
    Conserved Domains (2) summary
    cd06907
    Location:323 → 578
    M14_AGBL2-3_like; Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins
    pfam18027
    Location:175 → 301
    Pepdidase_M14_N; Cytosolic carboxypeptidase N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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